A630031M04Rik Gene Detail

Summary

• Symbol
  A630031M04Rik
• Name
  RIKEN cDNA A630031M04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444470
  NCBI Gene: 115486416
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:127403991-127426683 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 61.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  748 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444470	lncRNA gene	Chr4:127338198-127464295 (+)
129S1/SvImJ	ENSMUSG00200015082	lncRNA gene	Chr4:120808038-120903936 (+)
A/J	ENSMUSG00195045766	lncRNA gene	Chr4:122144518-122240495 (+)
AKR/J	ENSMUSG00220023104	lncRNA gene	Chr4:121131707-121227656 (+)
BALB/cJ	ENSMUSG00180047890	lncRNA gene	Chr4:119778264-119874224 (+)
C3H/HeJ	ENSMUSG00175027065	lncRNA gene	Chr4:120790957-120886906 (+)
C57BL/6NJ	ENSMUSG00215052623	lncRNA gene	Chr4:122288226-122384139 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005921	lincRNA gene	Chr4:117323137-117347055 (+)
CAST/EiJ	ENSTCUG00005046761	lncRNA gene	Chr4:121675720-121769845 (+)
CBA/J	ENSMUSG00210052891	lncRNA gene	Chr4:120419834-120515783 (+)
DBA/2J	ENSMUSG00185049331	lncRNA gene	Chr4:121952448-122048389 (+)
FVB/NJ	ENSMUSG00205028276	lncRNA gene	Chr4:120169708-120263727 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230039241	lncRNA gene	Chr4:125745643-125841528 (+)
NOD/ShiLtJ	ENSMUSG00190047521	lncRNA gene	Chr4:120172320-120268331 (+)
NZO/HlLtJ	ENSMUSG00225016237	lncRNA gene	Chr4:131659422-131755331 (+)
PWK/PhJ	ENSLUMG00010048254	lncRNA gene	Chr4:119624596-119718178 (+)
SPRET/EiJ	ENSMSPG00010042677	lncRNA gene	Chr4:121706145-121800461 (+)
WSB/EiJ	ENSIUOG00005048023	lncRNA gene	Chr4:120023324-120119323 (+)

Homology

• Gene Tree
  A630031M04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving A630031M04Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  82
• RefSeq
  5

• Ensembl
  ENSMUSG00000087470 (Evidence)
• NCBI Gene
  115486416

Representative Sequences			Length	Strain/Species
genomic	115486416	NCBI Gene Model | MGI Sequence Detail	22693	C57BL/6J
transcript	NR_189616	RefSeq | MGI Sequence Detail	2664	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 16

  Phenotypes 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A630031M04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39062	Chr4:127416232-127416243 (+)	12,247 bp