D430040L24Rik Gene Detail

Summary

• Symbol
  D430040L24Rik
• Name
  RIKEN cDNA D430040L24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444469
  NCBI Gene: 105246914
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:92274877-92277972 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  198 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444469	lncRNA gene	Chr5:92274449-92277972 (+)
129S1/SvImJ	ENSMUSG00200009344	lncRNA gene	Chr5:88018921-88021801 (+)
A/J	ENSMUSG00195026076	lncRNA gene	Chr5:87178123-87180989 (+)
AKR/J	ENSMUSG00220012629	lncRNA gene	Chr5:87328603-87331483 (+)
BALB/cJ	ENSMUSG00180026991	lncRNA gene	Chr5:87022981-87025861 (+)
C3H/HeJ	ENSMUSG00175043800	lncRNA gene	Chr5:89123756-89126636 (+)
C57BL/6NJ	ENSMUSG00215032290	lncRNA gene	Chr5:87875371-87878236 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038937	lncRNA gene	Chr5:86744851-86747766 (+)
CBA/J	ENSMUSG00210006937	lncRNA gene	Chr5:87902492-87905374 (+)
DBA/2J	ENSMUSG00185040929	lncRNA gene	Chr5:89839229-89842109 (+)
FVB/NJ	ENSMUSG00205034093	lncRNA gene	Chr5:86727947-86730824 (+)
JF1/MsJ	ENSUMUG00000044858	lncRNA gene	Chr5:94090621-94093503 (+)
LP/J	ENSMUSG00230028055	lncRNA gene	Chr5:94530123-94533003 (+)
NOD/ShiLtJ	ENSMUSG00190038588	lncRNA gene	Chr5:86806743-86809608 (+)
NZO/HlLtJ	ENSMUSG00225009490	lncRNA gene	Chr5:99677988-99680853 (+)
PWK/PhJ	ENSLUMG00010032696	lncRNA gene	Chr5:86769152-86772032 (+)
SPRET/EiJ	ENSMSPG00010035628	lncRNA gene	Chr5:89141907-89144811 (+)
WSB/EiJ	ENSIUOG00005029322	lncRNA gene	Chr5:89801299-89804175 (+)

Homology

• Gene Tree
  D430040L24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving D430040L24Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  3

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  1

• Ensembl
  ENSMUSG00000120423 (Evidence)
• NCBI Gene
  105246914

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120423	Ensembl Gene Model | MGI Sequence Detail	3096	C57BL/6J
transcript	ENSMUST00000295829	Ensembl | MGI Sequence Detail	1726	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for D430040L24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47281	Chr5:92275152-92275175 (+)	287 bp
Tssr47282	Chr5:92275198-92275208 (+)	326 bp
Tssr47283	Chr5:92275209-92275216 (+)	336 bp