C230071H17Rik Gene Detail

Summary

• Symbol
  C230071H17Rik
• Name
  RIKEN cDNA C230071H17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444463
  NCBI Gene: 320656
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:131911805-131914777 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  232 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444463	lncRNA gene	Chr5:131911805-131914777 (-)
129S1/SvImJ	ENSMUSG00200047218	unclassified gene	Chr5:125685541-125688513 (-)
A/J	ENSMUSG00195050541	unclassified gene	Chr5:125201263-125204235 (-)
AKR/J	ENSMUSG00220050140	unclassified gene	Chr5:124669406-124672378 (-)
BALB/cJ	ENSMUSG00180046171	unclassified gene	Chr5:125308497-125311470 (-)
C3H/HeJ	ENSMUSG00175041604	unclassified gene	Chr5:127268741-127271713 (-)
C57BL/6NJ	ENSMUSG00215049279	unclassified gene	Chr5:125341685-125344658 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001553	unclassified gene	Chr5:124721635-124724836 (-)
CAST/EiJ	ENSTCUG00005011007	unclassified gene	Chr5:124577461-124580514 (-)
CBA/J	ENSMUSG00210008513	unclassified gene	Chr5:126026379-126029351 (-)
DBA/2J	ENSMUSG00185007674	unclassified gene	Chr5:129071678-129074650 (-)
FVB/NJ	ENSMUSG00205049552	unclassified gene	Chr5:124967281-124970250 (-)
JF1/MsJ	ENSUMUG00000053637	unclassified gene	Chr5:131985643-131988719 (-)
LP/J	ENSMUSG00230049134	unclassified gene	Chr5:133183187-133186159 (-)
NOD/ShiLtJ	ENSMUSG00190049078	unclassified gene	Chr5:125003664-125006643 (-)
NZO/HlLtJ	ENSMUSG00225014386	unclassified gene	Chr5:140869862-140872827 (-)
PWK/PhJ	ENSLUMG00010018397	unclassified gene	Chr5:123853182-123856248 (-)
SPRET/EiJ	ENSMSPG00010031683	unclassified gene	Chr5:127265282-127268326 (-)
WSB/EiJ	ENSIUOG00005035314	unclassified gene	Chr5:127646098-127649119 (-)

Homology

• Gene Tree
  C230071H17Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000106570 (Evidence)
• NCBI Gene
  320656

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106570	Ensembl Gene Model | MGI Sequence Detail	2973	C57BL/6J
transcript	AK048805	GenBank | ENA | DDBJ | MGI Sequence Detail	2166	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for C230071H17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr53570	Chr5:131914754-131914758 (-)	21 bp