9530056K15Rik Gene Detail

Summary

• Symbol
  9530056K15Rik
• Name
  RIKEN cDNA 9530056K15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444456
  NCBI Gene: 320650
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:143376483-143389514 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 82.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  490 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444456	lncRNA gene	Chr5:143376483-143389514 (-)
129S1/SvImJ	ENSMUSG00200041839	lncRNA gene	Chr5:137247735-137253500 (-)
A/J	ENSMUSG00195045662	lncRNA gene	Chr5:136892063-136897937 (-)
AKR/J	ENSMUSG00220023981	lncRNA gene	Chr5:136125176-136130941 (-)
BALB/cJ	ENSMUSG00180035948	lncRNA gene	Chr5:136994112-136999986 (-)
C3H/HeJ	ENSMUSG00175049978	lncRNA gene	Chr5:138919594-138925468 (-)
C57BL/6NJ	ENSMUSG00215041993	lncRNA gene	Chr5:136828232-136834106 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001589	unclassified gene	Chr5:136124727-136126849 (-)
CAST/EiJ	ENSTCUG00005036656	lncRNA gene	Chr5:136274482-136280196 (-)
CBA/J	ENSMUSG00210024563	lncRNA gene	Chr5:137726470-137732271 (-)
DBA/2J	ENSMUSG00185055147	lncRNA gene	Chr5:140721302-140727176 (-)
FVB/NJ	ENSMUSG00205041829	lncRNA gene	Chr5:136545770-136551644 (-)
JF1/MsJ	ENSUMUG00000053713	lncRNA gene	Chr5:143603444-143609274 (-)
LP/J	ENSMUSG00230030455	lncRNA gene	Chr5:144851480-144857245 (-)
NOD/ShiLtJ	ENSMUSG00190045513	lncRNA gene	Chr5:136684575-136690449 (-)
NZO/HlLtJ	ENSMUSG00225024056	lncRNA gene	Chr5:152318821-152324695 (-)
PWK/PhJ	ENSLUMG00010021426	lncRNA gene	Chr5:135308884-135314718 (-)
SPRET/EiJ	ENSMSPG00010039358	lncRNA gene	Chr5:138923587-138929333 (-)
WSB/EiJ	ENSIUOG00005039471	lncRNA gene	Chr5:139209913-139215783 (-)

Homology

• Gene Tree
  9530056K15Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• UniProt
  1

• Ensembl
  ENSMUSG00000045345 (Evidence)
• NCBI Gene
  320650

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045345	Ensembl Gene Model | MGI Sequence Detail	13032	C57BL/6J
transcript	ENSMUST00000197918	Ensembl | MGI Sequence Detail	2631	Not Applicable
polypeptide	Q8CBR2	UniProt | EBI | MGI Sequence Detail	137	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  Genomic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 9530056K15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54370	Chr5:143390995-143391013 (-)	-1,490 bp