C130089K02Rik Gene Detail

Summary

• Symbol
  C130089K02Rik
• Name
  RIKEN cDNA C130089K02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444420
  NCBI Gene: 320637
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:51964706-51971665 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  300 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444420	lncRNA gene	Chr3:51964706-51971665 (-)
129S1/SvImJ	ENSMUSG00200000504	unclassified gene	Chr3:48794827-48801775 (-)
A/J	ENSMUSG00195000768	unclassified gene	Chr3:48752352-48759312 (-)
AKR/J	ENSMUSG00220015900	unclassified gene	Chr3:48806872-48813833 (-)
BALB/cJ	ENSMUSG00180000634	unclassified gene	Chr3:48835785-48842744 (-)
C3H/HeJ	ENSMUSG00175002094	unclassified gene	Chr3:48666142-48673101 (-)
C57BL/6NJ	ENSMUSG00215000675	unclassified gene	Chr3:49099858-49106817 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000955	unclassified gene	Chr3:45698900-45705779 (-)
CAST/EiJ	ENSTCUG00005009680	unclassified gene	Chr3:48473094-48480127 (-)
CBA/J	ENSMUSG00210000943	unclassified gene	Chr3:48778299-48785259 (-)
DBA/2J	ENSMUSG00185000365	unclassified gene	Chr3:49015371-49022330 (-)
FVB/NJ	ENSMUSG00205009400	unclassified gene	Chr3:47997801-48004750 (-)
JF1/MsJ	ENSUMUG00000024581	unclassified gene	Chr3:48434413-48441446 (-)
LP/J	ENSMUSG00230000337	unclassified gene	Chr3:50966984-50973932 (-)
NOD/ShiLtJ	ENSMUSG00190000440	unclassified gene	Chr3:49145169-49152128 (-)
NZO/HlLtJ	ENSMUSG00225017989	unclassified gene	Chr3:53589773-53596732 (-)
PWK/PhJ	ENSLUMG00010009881	unclassified gene	Chr3:48602150-48609180 (-)
SPRET/EiJ	ENSMSPG00010007485	unclassified gene	Chr3:49257437-49263563 (-)
WSB/EiJ	ENSIUOG00005000575	unclassified gene	Chr3:48936436-48943392 (-)

Homology

• Gene Tree
  C130089K02Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000104339 (Evidence)
• NCBI Gene
  320637

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104339	Ensembl Gene Model | MGI Sequence Detail	6960	C57BL/6J
transcript	AK038829	GenBank | ENA | DDBJ | MGI Sequence Detail	3426	C57BL/6J

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 5
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for C130089K02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33249	Chr3:51971648-51971653 (-)	14 bp