9230105E05Rik Gene Detail

Summary

• Symbol
  9230105E05Rik
• Name
  RIKEN cDNA 9230105E05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444388
  NCBI Gene: 320626
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:120225428-120228698 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 67.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444388	lncRNA gene	Chr10:120224499-120228698 (+)
129S1/SvImJ	ENSMUSG00200026890	lncRNA gene	Chr10:116576559-116579829 (+)
A/J	ENSMUSG00195022628	lncRNA gene	Chr10:116981025-116984293 (+)
AKR/J	ENSMUSG00220014883	lncRNA gene	Chr10:116619692-116622965 (+)
BALB/cJ	ENSMUSG00180017180	lncRNA gene	Chr10:116993563-116996831 (+)
C3H/HeJ	ENSMUSG00175026725	lncRNA gene	Chr10:116996711-116999981 (+)
C57BL/6NJ	ENSMUSG00215017128	lncRNA gene	Chr10:116635531-116638801 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002555	antisense lncRNA gene	Chr10:113012024-113015327 (+)
CAST/EiJ	ENSTCUG00005033742	lncRNA gene	Chr10:115959384-115962659 (+)
CBA/J	ENSMUSG00210021356	lncRNA gene	Chr10:116833485-116836755 (+)
DBA/2J	ENSMUSG00185009668	lncRNA gene	Chr10:116944947-116948217 (+)
FVB/NJ	ENSMUSG00205031585	lncRNA gene	Chr10:116241600-116244870 (+)
JF1/MsJ	ENSUMUG00000026247	lncRNA gene	Chr10:118227161-118230445 (+)
LP/J	ENSMUSG00230025455	lncRNA gene	Chr10:118904882-118908140 (+)
NOD/ShiLtJ	ENSMUSG00190018198	lncRNA gene	Chr10:117044456-117047724 (+)
NZO/HlLtJ	ENSMUSG00225038318	lncRNA gene	Chr10:123154469-123157739 (+)
PWK/PhJ	ENSLUMG00010013641	lncRNA gene	Chr10:116622216-116625471 (+)
SPRET/EiJ	ENSMSPG00010016388	lncRNA gene	Chr10:118539788-118543023 (+)
WSB/EiJ	ENSIUOG00005014455	lncRNA gene	Chr10:116679339-116682597 (+)

Homology

• Gene Tree
  9230105E05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9230105E05Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000090191 (Evidence)
• NCBI Gene
  320626

Representative Sequences			Length	Strain/Species
genomic	320626	NCBI Gene Model | MGI Sequence Detail	3271	C57BL/6J
transcript	NR_040626	RefSeq | MGI Sequence Detail	2250	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9230105E05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95998	Chr10:120224514-120224533 (+)	-904 bp