3632454L22Rik Gene Detail

Summary

• Symbol
  3632454L22Rik
• Name
  RIKEN cDNA 3632454L22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444359
  NCBI Gene: 320606
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:133923435-133961092 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 56.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  669 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444359	lncRNA gene	ChrX:133923159-133961092 (-)
129S1/SvImJ	ENSMUSG00200048911	lncRNA gene	ChrX:112992859-113036709 (-)
A/J	ENSMUSG00195048911	lncRNA gene	ChrX:116854862-116895041 (-)
AKR/J	ENSMUSG00220013356	lncRNA gene	ChrX:110466041-110479917 (-)
BALB/cJ	ENSMUSG00180039063	lncRNA gene	ChrX:113272991-113320682 (-)
C3H/HeJ	ENSMUSG00175033513	lncRNA gene	ChrX:117121381-117167771 (-)
C57BL/6NJ	ENSMUSG00215045325	lncRNA gene	ChrX:113629967-113664100 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013906	unclassified non-coding RNA gene	ChrX:123810431-123848509 (-)
CAST/EiJ	ENSTCUG00005040640	lncRNA gene	ChrX:114447106-114483251 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185030354	lncRNA gene	ChrX:127947477-128013759 (-)
FVB/NJ	ENSMUSG00205034505	lncRNA gene	ChrX:112637788-112674669 (-)
JF1/MsJ	ENSUMUG00000030757	lncRNA gene	ChrX:147096446-147118377 (-)
LP/J	ENSMUSG00230040593	lncRNA gene	ChrX:134636034-134702324 (-)
NOD/ShiLtJ	ENSMUSG00190041286	lncRNA gene	ChrX:113446203-113513700 (-)
NZO/HlLtJ	ENSMUSG00225036992	lncRNA gene	ChrX:139289430-139334226 (-)
PWK/PhJ	ENSLUMG00010044842	lncRNA gene	ChrX:111763236-111785129 (-)
SPRET/EiJ	ENSMSPG00010039893	lncRNA gene	ChrX:116646145-116667190 (-)
WSB/EiJ	ENSIUOG00005038520	lncRNA gene	ChrX:114186282-114216938 (-)

Homology

• Gene Tree
  3632454L22Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving 3632454L22Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  3

• Ensembl
  ENSMUSG00000089759 (Evidence)
• NCBI Gene
  320606

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089759	Ensembl Gene Model | MGI Sequence Detail	37658	C57BL/6J
transcript	ENSMUST00000153610	Ensembl | MGI Sequence Detail	3038	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:366728 Chen X, et al., Long Noncoding RNA 3632454L22Rik Contributes to Corneal Epithelial Wound Healing by Sponging miR-181a-5p in Diabetic Mice. Invest Ophthalmol Vis Sci. 2021 Nov 1;62(14):16

TSS for 3632454L22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164166	ChrX:133936840-133936848 (-)	24,248 bp
Tssr164165	ChrX:133936827-133936839 (-)	24,259 bp
Tssr164164	ChrX:133926056-133926093 (-)	35,017 bp