9130004C02Rik Gene Detail

Summary

• Symbol
  9130004C02Rik
• Name
  RIKEN cDNA 9130004C02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444340
  NCBI Gene: 626123
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr9:25158406-25164015 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444340	lncRNA gene	Chr9:25158406-25164015 (-)
129S1/SvImJ	ENSMUSG00200008244	lncRNA gene	Chr9:22144136-22146271 (-)
A/J	ENSMUSG00195006221	lncRNA gene	Chr9:21956247-21958382 (-)
AKR/J	ENSMUSG00220010879	lncRNA gene	Chr9:21955193-21957328 (-)
BALB/cJ	ENSMUSG00180006776	lncRNA gene	Chr9:22090420-22092555 (-)
C3H/HeJ	ENSMUSG00175020007	lncRNA gene	Chr9:22066896-22069031 (-)
C57BL/6NJ	ENSMUSG00215008735	lncRNA gene	Chr9:22052233-22054368 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019163	lncRNA gene	Chr9:22058515-22060657 (-)
CBA/J	ENSMUSG00210022209	lncRNA gene	Chr9:22100490-22102625 (-)
DBA/2J	ENSMUSG00185002548	lncRNA gene	Chr9:22149031-22151166 (-)
FVB/NJ	ENSMUSG00205004927	lncRNA gene	Chr9:22429107-22431242 (-)
JF1/MsJ	ENSUMUG00000016773	lncRNA gene	Chr9:22249358-22251492 (-)
LP/J	ENSMUSG00230005371	lncRNA gene	Chr9:22548872-22551007 (-)
NOD/ShiLtJ	ENSMUSG00190006258	lncRNA gene	Chr9:22121948-22124083 (-)
NZO/HlLtJ	ENSMUSG00225015058	lncRNA gene	Chr9:22551589-22553724 (-)
PWK/PhJ	ENSLUMG00010009964	lncRNA gene	Chr9:22134367-22136502 (-)
SPRET/EiJ	ENSMSPG00010002165	lncRNA gene	Chr9:22435362-22437502 (-)
WSB/EiJ	ENSIUOG00005016288	lncRNA gene	Chr9:21614759-21616896 (-)

Homology

• Gene Tree
  9130004C02Rik
  

Expression

• cDNA Data
  7

• Other Mouse Links
  Allen Institute
  GEO

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000120169 (Evidence)
• NCBI Gene
  626123

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120169	Ensembl Gene Model | MGI Sequence Detail	5610	C57BL/6J
transcript	ENSMUST00000241720	Ensembl | MGI Sequence Detail	2407	Not Applicable

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 4

References

• Summaries
  All 9
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 9130004C02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr88531	Chr9:25163693-25163711 (-)	313 bp
Tssr88530	Chr9:25163667-25163683 (-)	340 bp
Tssr88529	Chr9:25163318-25163380 (-)	666 bp
Tssr88528	Chr9:25163280-25163293 (-)	728 bp