A230051N06Rik Gene Detail

Summary

• Symbol
  A230051N06Rik
• Name
  RIKEN cDNA A230051N06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444339
  NCBI Gene: 320593
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:56548716-56549805 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444339	lncRNA gene	Chr17:56548694-56549809 (+)
129S1/SvImJ	ENSMUSG00200016748	lncRNA gene	Chr17:51823795-51824910 (+)
A/J	ENSMUSG00195007145	lncRNA gene	Chr17:53211230-53212345 (+)
AKR/J	ENSMUSG00220013379	lncRNA gene	Chr17:52260599-52261714 (+)
BALB/cJ	ENSMUSG00180006509	lncRNA gene	Chr17:52968853-52969968 (+)
C3H/HeJ	ENSMUSG00175007675	lncRNA gene	Chr17:52284929-52286044 (+)
C57BL/6NJ	ENSMUSG00215009178	lncRNA gene	Chr17:51899035-51900150 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019624	lncRNA gene	Chr17:53016069-53017226 (+)
CBA/J	ENSMUSG00210028883	lncRNA gene	Chr17:52051985-52053100 (+)
DBA/2J	ENSMUSG00185009608	lncRNA gene	Chr17:54921823-54922938 (+)
FVB/NJ	ENSMUSG00205007254	lncRNA gene	Chr17:52599489-52600604 (+)
JF1/MsJ	ENSUMUG00000034078	lncRNA gene	Chr17:54600248-54601487 (+)
LP/J	ENSMUSG00230028949	lncRNA gene	Chr17:55901198-55902313 (+)
NOD/ShiLtJ	ENSMUSG00190010692	lncRNA gene	Chr17:52054687-52055802 (+)
NZO/HlLtJ	ENSMUSG00225043394	lncRNA gene	Chr17:58185043-58186158 (+)
PWK/PhJ	ENSLUMG00010009919	lncRNA gene	Chr17:51859536-51860663 (+)
SPRET/EiJ	ENSMSPG00010005980	lncRNA gene	Chr17:52175792-52176980 (+)
WSB/EiJ	ENSIUOG00005024571	lncRNA gene	Chr17:52961334-52962463 (+)

Homology

• Gene Tree
  A230051N06Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000117172 (Evidence)
• NCBI Gene
  320593

Representative Sequences			Length	Strain/Species
genomic	320593	NCBI Gene Model | MGI Sequence Detail	1090	C57BL/6J
transcript	NR_155493	RefSeq | MGI Sequence Detail	749	ZRU/MplStud
polypeptide	Q8CAK0	UniProt | EBI | MGI Sequence Detail	114	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A230051N06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145290	Chr17:56548740-56548751 (+)	30 bp
Tssr145291	Chr17:56548752-56548786 (+)	53 bp