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Tmem88b Gene Detail
Summary
  • Symbol
    Tmem88b
  • Name
    transmembrane protein 88B
  • Synonyms
    A230069A22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444329
    NCBI Gene: 320587
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:155866048-155870331 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 87.36 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    49 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444329
 protein coding gene Chr4:155866048-155870331 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029227
 protein coding gene Chr4:160145154-160149292 (-)
A/J MGP_AJ_G0029192
 protein coding gene Chr4:153400153-153404433 (-)
AKR/J MGP_AKRJ_G0029140
 protein coding gene Chr4:157567562-157573838 (-)
BALB/cJ MGP_BALBcJ_G0029208
 protein coding gene Chr4:153873289-153877428 (-)
C3H/HeJ MGP_C3HHeJ_G0028929
 protein coding gene Chr4:158117733-158121904 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029657
 protein coding gene Chr4:165825005-165829165 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026902
 protein coding gene Chr4:145685247-145689530 (-)
CAST/EiJ MGP_CASTEiJ_G0028341
 protein coding gene Chr4:155578932-155583317 (-)
CBA/J MGP_CBAJ_G0028891
 protein coding gene Chr4:170837266-170844140 (-)
DBA/2J MGP_DBA2J_G0029040
 protein coding gene Chr4:153421203-153425644 (-)
FVB/NJ MGP_FVBNJ_G0029003
 protein coding gene Chr4:152668716-152672868 (-)
LP/J MGP_LPJ_G0029130
 protein coding gene Chr4:160075406-160080730 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029030
 protein coding gene Chr4:173649352-173654627 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029689
 protein coding gene Chr4:158201758-158206938 (-)
PWK/PhJ MGP_PWKPhJ_G0028062
 protein coding gene Chr4:149561576-149566754 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027896
 protein coding gene Chr4:152451123-152455437 (-)
WSB/EiJ MGP_WSBEiJ_G0028421
 protein coding gene Chr4:158373110-158378687 (-)



Homology
more
  • Human Ortholog
    TMEM88B, transmembrane protein 88B
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TMEM88B, transmembrane protein 88B
  • Links
    NCBI Gene ID: 643965
    neXtProt AC: NX_A6NKF7
    UniProt: A6NKF7

  • Chr Location
    1p36.33; chr1:1426128-1427787 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    3 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 320587 NCBI Gene Model | MGI Sequence Detail 4284 C57BL/6J ±  kb
    transcript NM_001033394 RefSeq | MGI Sequence Detail 3471 C57BL/6  
    polypeptide Q3TYP4 UniProt | EBI | MGI Sequence Detail 173 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 9
      cDNA 9

      Microarray probesets 2
    References
    more
    • Summaries
      All 22
      Gene Ontology 2
      Phenotypes 3
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    03/14/2023
    MGI 6.22     		The Jackson Laboratory