A730032A03Rik Gene Detail

Summary

• Symbol
  A730032A03Rik
• Name
  RIKEN cDNA A730032A03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444311
  NCBI Gene: 102639814
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:164019504-164038484 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 84.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  709 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444311	lncRNA gene	Chr2:164019504-164038484 (+)
129S1/SvImJ	ENSMUSG00200017368	lncRNA gene	Chr2:160892889-160911887 (+)
A/J	ENSMUSG00195022464	lncRNA gene	Chr2:161233058-161252040 (+)
AKR/J	ENSMUSG00220014090	lncRNA gene	Chr2:160560509-160579492 (+)
BALB/cJ	ENSMUSG00180050478	lncRNA gene	Chr2:160686803-160705785 (+)
C3H/HeJ	ENSMUSG00175051526	lncRNA gene	Chr2:161436582-161455565 (+)
C57BL/6NJ	ENSMUSG00215037528	lncRNA gene	Chr2:160889855-160908835 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003308	antisense lncRNA gene	Chr2:156013213-156032630 (+)
CAST/EiJ	ENSTCUG00005047238	lncRNA gene	Chr2:159798335-159819261 (+)
CBA/J	ENSMUSG00210017118	lncRNA gene	Chr2:161367554-161386534 (+)
DBA/2J	ENSMUSG00185050680	lncRNA gene	Chr2:161103780-161122763 (+)
FVB/NJ	ENSMUSG00205043926	lncRNA gene	Chr2:160125004-160143982 (+)
JF1/MsJ	ENSUMUG00000040053	lncRNA gene	Chr2:160749308-160768641 (+)
LP/J	ENSMUSG00230045998	lncRNA gene	Chr2:162662504-162681501 (+)
NOD/ShiLtJ	ENSMUSG00190047984	lncRNA gene	Chr2:160772375-160791375 (+)
NZO/HlLtJ	ENSMUSG00225053366	lncRNA gene	Chr2:170666130-170685112 (+)
PWK/PhJ	ENSLUMG00010049724	lncRNA gene	Chr2:160653414-160672599 (+)
SPRET/EiJ	ENSMSPG00010038712	lncRNA gene	Chr2:163418305-163443529 (+)
WSB/EiJ	ENSIUOG00005047220	lncRNA gene	Chr2:160499760-160518744 (+)

Homology

• Gene Tree
  A730032A03Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000085649 (Evidence)
• NCBI Gene
  102639814

Representative Sequences			Length	Strain/Species
genomic	102639814	NCBI Gene Model | MGI Sequence Detail	18981	C57BL/6J
transcript	AK042861	GenBank | ENA | DDBJ | MGI Sequence Detail	1929	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A730032A03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21524	Chr2:164031517-164031520 (+)	12,015 bp