3222401L13Rik Gene Detail

Summary

• Symbol
  3222401L13Rik
• Name
  RIKEN cDNA 3222401L13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444186
  NCBI Gene: 105246409
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:37777160-37794795 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 19.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  495 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444186	lncRNA gene	Chr18:37777160-37794795 (+)
129S1/SvImJ	ENSMUSG00200042872	protein coding gene	Chr18:34788633-34790890 (+)
129S1/SvImJ	ENSMUSG00200044567	lncRNA gene	Chr18:34787867-34794159 (+)
A/J	ENSMUSG00195038832	lncRNA gene	Chr18:34938917-34945239 (+)
AKR/J	ENSMUSG00220016550	protein coding gene	Chr18:34909267-34911524 (+)
AKR/J	ENSMUSG00220017783	lncRNA gene	Chr18:34908501-34914793 (+)
BALB/cJ	ENSMUSG00180020614	lncRNA gene	Chr18:35388548-35394871 (+)
C3H/HeJ	ENSMUSG00175040838	lncRNA gene	Chr18:34903932-34910228 (+)
C3H/HeJ	ENSMUSG00175035748	protein coding gene	Chr18:34904698-34906958 (+)
C57BL/6NJ	ENSMUSG00215028913	lncRNA gene	Chr18:34658035-34664326 (+)
C57BL/6NJ	ENSMUSG00215021402	protein coding gene	Chr18:34658801-34661057 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005256	lincRNA gene	Chr18:34839391-34845763 (+)
CAST/EiJ	ENSTCUG00005024463	lncRNA gene	Chr18:34520070-34526329 (+)
CBA/J	ENSMUSG00210021822	lncRNA gene	Chr18:34930559-34936881 (+)
DBA/2J	ENSMUSG00185020450	lncRNA gene	Chr18:34865197-34871519 (+)
FVB/NJ	ENSMUSG00205030707	protein coding gene	Chr18:34567584-34569841 (+)
FVB/NJ	ENSMUSG00205034186	lncRNA gene	Chr18:34566818-34573110 (+)
JF1/MsJ	ENSUMUG00000049054	lncRNA gene	Chr18:35000970-35007244 (+)
LP/J	ENSMUSG00230043385	protein coding gene	Chr18:36982779-36985036 (+)
LP/J	ENSMUSG00230048740	lncRNA gene	Chr18:36982013-36988305 (+)
NOD/ShiLtJ	ENSMUSG00190022928	lncRNA gene	Chr18:34652267-34658563 (+)
NOD/ShiLtJ	ENSMUSG00190017774	protein coding gene	Chr18:34653033-34655293 (+)
NZO/HlLtJ	ENSMUSG00225047455	lncRNA gene	Chr18:36888859-36895150 (+)
NZO/HlLtJ	ENSMUSG00225044525	protein coding gene	Chr18:36889625-36891882 (+)
PWK/PhJ	ENSLUMG00010013835	lncRNA gene	Chr18:35143311-35149605 (+)
SPRET/EiJ	ENSMSPG00010023759	lncRNA gene	Chr18:35179541-35185791 (+)
WSB/EiJ	ENSIUOG00005008086	lncRNA gene	Chr18:34644664-34650956 (+)

Homology

• Gene Tree
  3222401L13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  2 involving 3222401L13Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000073590 (Evidence)
• NCBI Gene
  105246409

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073590	Ensembl Gene Model | MGI Sequence Detail	17636	C57BL/6J
transcript	ENSMUST00000192137	Ensembl | MGI Sequence Detail	6292	Not Applicable
polypeptide	Q3UEV8	UniProt | EBI | MGI Sequence Detail	97	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 3

References

• Summaries
  All 14

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)

TSS for 3222401L13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150712	Chr18:37777369-37777398 (+)	224 bp
Tssr150713	Chr18:37788944-37788968 (+)	11,796 bp