5930403N24Rik Gene Detail

Summary

• Symbol
  5930403N24Rik
• Name
  RIKEN cDNA 5930403N24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444171
  NCBI Gene: 100040846
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:37015398-37027311 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 19.49 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  54 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444171	lncRNA gene	Chr10:37015398-37027981 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015133	unclassified non-coding RNA gene	Chr10:35571144-35583049 (+)
A/J	MGP_AJ_G0015107	unclassified non-coding RNA gene	Chr10:34638982-34650902 (+)
AKR/J	MGP_AKRJ_G0015070	unclassified non-coding RNA gene	Chr10:35084444-35100296 (+)
BALB/cJ	MGP_BALBcJ_G0015070	unclassified non-coding RNA gene	Chr10:34596991-34608880 (+)
C3H/HeJ	MGP_C3HHeJ_G0014893	unclassified non-coding RNA gene	Chr10:35407110-35419873 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015526	unclassified non-coding RNA gene	Chr10:36643402-36656123 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013272	unclassified non-coding RNA gene	Chr10:32724077-32736612 (+)
CAST/EiJ	MGP_CASTEiJ_G0014447	unclassified non-coding RNA gene	Chr10:35580124-35593667 (+)
CBA/J	MGP_CBAJ_G0014872	unclassified non-coding RNA gene	Chr10:38367132-38380793 (+)
DBA/2J	MGP_DBA2J_G0014965	unclassified non-coding RNA gene	Chr10:34202795-34214685 (+)
FVB/NJ	MGP_FVBNJ_G0014976	unclassified non-coding RNA gene	Chr10:33690101-33705229 (+)
LP/J	MGP_LPJ_G0015047	unclassified non-coding RNA gene	Chr10:35544092-35556552 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015003	unclassified non-coding RNA gene	Chr10:39122948-39134867 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015565	unclassified non-coding RNA gene	Chr10:35047801-35061746 (+)
PWK/PhJ	MGP_PWKPhJ_G0014239	unclassified non-coding RNA gene	Chr10:33991342-34003504 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014027	unclassified non-coding RNA gene	Chr10:34888584-34900919 (+)
WSB/EiJ	MGP_WSBEiJ_G0014550	unclassified non-coding RNA gene	Chr10:35346914-35360381 (+)

Homology

• Gene Tree
  5930403N24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 5930403N24Rik
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000046463 (Evidence)
• NCBI Gene
  100040846

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000046463	Ensembl Gene Model | MGI Sequence Detail	11914	C57BL/6J
transcript	ENSMUST00000188813	Ensembl | MGI Sequence Detail	3965	Not Applicable
polypeptide	Q8BMI2	UniProt | EBI | MGI Sequence Detail	124	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 5930403N24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92962	Chr10:37013522-37013526 (+)	-1,874 bp
Tssr92963	Chr10:37015521-37015536 (+)	131 bp