C330024D21Rik Gene Detail

Summary

• Symbol
  C330024D21Rik
• Name
  RIKEN cDNA C330024D21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444116
  NCBI Gene: 320479
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:67621241-67635242 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 36.09 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  512 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444116	lncRNA gene	Chr5:67621240-67685733 (+)
129S1/SvImJ	ENSMUSG00200036513	lncRNA gene	Chr5:63250589-63264293 (+)
129S1/SvImJ	ENSMUSG00200035741	protein coding gene	Chr5:63250566-63328764 (+)
A/J	ENSMUSG00195035841	lncRNA gene	Chr5:62604912-62618616 (+)
A/J	ENSMUSG00195032338	protein coding gene	Chr5:62604880-62652132 (+)
AKR/J	ENSMUSG00220004382	lncRNA gene	Chr5:62742805-62756508 (+)
AKR/J	ENSMUSG00220004023	protein coding gene	Chr5:62742773-62820972 (+)
BALB/cJ	ENSMUSG00180023403	lncRNA gene	Chr5:62392386-62406109 (+)
C3H/HeJ	ENSMUSG00175028786	lncRNA gene	Chr5:64425163-64438867 (+)
C3H/HeJ	ENSMUSG00175025919	protein coding gene	Chr5:64425131-64472387 (+)
C57BL/6NJ	ENSMUSG00215004552	protein coding gene	Chr5:63168642-63247121 (+)
C57BL/6NJ	ENSMUSG00215005877	lncRNA gene	Chr5:63168674-63182411 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013730	unclassified non-coding RNA gene	Chr5:60767036-60780351 (+)
CAST/EiJ	ENSTCUG00005031823	lncRNA gene	Chr5:62316450-62336630 (+)
CBA/J	ENSMUSG00210023361	protein coding gene	Chr5:63338003-63416198 (+)
CBA/J	ENSMUSG00210023432	lncRNA gene	Chr5:63338026-63351730 (+)
DBA/2J	ENSMUSG00185005865	lncRNA gene	Chr5:65195560-65209265 (+)
DBA/2J	ENSMUSG00185005404	protein coding gene	Chr5:65195537-65242785 (+)
FVB/NJ	ENSMUSG00205018228	protein coding gene	Chr5:62143111-62221326 (+)
FVB/NJ	ENSMUSG00205033602	lncRNA gene	Chr5:62143134-62156838 (+)
JF1/MsJ	ENSUMUG00000023735	lncRNA gene	Chr5:69704896-69718605 (+)
LP/J	ENSMUSG00230009577	lncRNA gene	Chr5:69863116-69876820 (+)
LP/J	ENSMUSG00230008529	protein coding gene	Chr5:69863093-69941293 (+)
NOD/ShiLtJ	ENSMUSG00190003738	protein coding gene	Chr5:62329530-62407723 (+)
NOD/ShiLtJ	ENSMUSG00190004612	lncRNA gene	Chr5:62329553-62343256 (+)
NZO/HlLtJ	ENSMUSG00225010993	lncRNA gene	Chr5:74963727-74977462 (+)
NZO/HlLtJ	ENSMUSG00225009028	protein coding gene	Chr5:74963695-75042255 (+)
PWK/PhJ	ENSLUMG00010014784	lncRNA gene	Chr5:62313579-62327281 (+)
SPRET/EiJ	ENSMSPG00010036799	lncRNA gene	Chr5:64098533-64112233 (+)
WSB/EiJ	ENSIUOG00005019425	lncRNA gene	Chr5:65299961-65313666 (+)

Homology

• Gene Tree
  C330024D21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  19 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Gene trapped
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving C330024D21Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  61
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000107385 (Evidence)
• NCBI Gene
  320479

Representative Sequences			Length	Strain/Species
genomic	320479	NCBI Gene Model | MGI Sequence Detail	14002	C57BL/6J
transcript	NR_015582	RefSeq | MGI Sequence Detail	2763	C57BL/6
polypeptide	Q3TE67	UniProt | EBI | MGI Sequence Detail	81	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 32

  Phenotypes 19
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:241317 Engreitz JM, et al., Local regulation of gene expression by lncRNA promoters, transcription and splicing. Nature. 2016 Nov 17;539(7629):452-455

TSS for C330024D21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46586	Chr5:67621229-67621280 (+)	14 bp
Tssr1502	Chr5:67631266-67631269 (+)	10,027 bp