E030042O20Rik Gene Detail

Summary

• Symbol
  E030042O20Rik
• Name
  RIKEN cDNA E030042O20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444099
  NCBI Gene: 320474
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:75534188-75546444 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 44.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  437 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444099	lncRNA gene	Chr2:75534188-75548841 (+)
129S1/SvImJ	ENSMUSG00200004974	lncRNA gene	Chr2:72576547-72587681 (+)
A/J	ENSMUSG00195020532	lncRNA gene	Chr2:72723374-72734508 (+)
AKR/J	ENSMUSG00220002488	lncRNA gene	Chr2:72692954-72704078 (+)
BALB/cJ	ENSMUSG00180007441	lncRNA gene	Chr2:72677050-72688184 (+)
C3H/HeJ	ENSMUSG00175011285	lncRNA gene	Chr2:72800336-72811469 (+)
C57BL/6NJ	ENSMUSG00215029475	lncRNA gene	Chr2:72647380-72658504 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013563	unclassified non-coding RNA gene	Chr2:70509565-70514832 (+)
CAST/EiJ	ENSTCUG00005032295	lncRNA gene	Chr2:72120781-72131886 (+)
CBA/J	ENSMUSG00210002628	lncRNA gene	Chr2:72841390-72852524 (+)
DBA/2J	ENSMUSG00185011488	lncRNA gene	Chr2:72677220-72688354 (+)
FVB/NJ	ENSMUSG00205018734	lncRNA gene	Chr2:72138297-72149422 (+)
JF1/MsJ	ENSUMUG00000043633	lncRNA gene	Chr2:72379938-72391052 (+)
LP/J	ENSMUSG00230027474	lncRNA gene	Chr2:74481647-74492780 (+)
NOD/ShiLtJ	ENSMUSG00190010990	lncRNA gene	Chr2:72752579-72763693 (+)
NZO/HlLtJ	ENSMUSG00225003940	lncRNA gene	Chr2:82246409-82257542 (+)
PWK/PhJ	ENSLUMG00010032807	lncRNA gene	Chr2:72608365-72619453 (+)
SPRET/EiJ	ENSMSPG00010021771	lncRNA gene	Chr2:73994998-74006412 (+)
WSB/EiJ	ENSIUOG00005011563	lncRNA gene	Chr2:72804838-72815944 (+)

Homology

• Gene Tree
  E030042O20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  4
• Targeted
  2
• Genomic Mutations
  3 involving E030042O20Rik
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2

• Ensembl
  ENSMUSG00000087222 (Evidence)
• NCBI Gene
  320474

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087222	Ensembl Gene Model | MGI Sequence Detail	12257	C57BL/6J
transcript	ENSMUST00000244805	Ensembl | MGI Sequence Detail	2975	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 7
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for E030042O20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18461	Chr2:75534473-75534484 (+)	291 bp
Tssr18462	Chr2:75535195-75535224 (+)	1,022 bp
Tssr18463	Chr2:75545388-75545393 (+)	11,203 bp