9230110F11Rik Gene Detail

Summary

• Symbol
  9230110F11Rik
• Name
  RIKEN cDNA 9230110F11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444007
  NCBI Gene: 320432
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:105437881-105444892 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  275 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444007	lncRNA gene	Chr8:105437881-105444892 (+)
129S1/SvImJ	ENSMUSG00200015195	lncRNA gene	Chr8:99736115-99743630 (+)
A/J	ENSMUSG00195004131	lncRNA gene	Chr8:100019636-100027155 (+)
AKR/J	ENSMUSG00220011870	lncRNA gene	Chr8:100185136-100192660 (+)
BALB/cJ	ENSMUSG00180004228	lncRNA gene	Chr8:100045034-100052550 (+)
C3H/HeJ	ENSMUSG00175002989	lncRNA gene	Chr8:100101800-100109310 (+)
C57BL/6NJ	ENSMUSG00215001403	lncRNA gene	Chr8:99716121-99723634 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023948	lncRNA gene	Chr8:99500380-99507132 (+)
CBA/J	ENSMUSG00210015400	lncRNA gene	Chr8:100030384-100037902 (+)
DBA/2J	ENSMUSG00185006029	lncRNA gene	Chr8:106138271-106145786 (+)
FVB/NJ	ENSMUSG00205019429	lncRNA gene	Chr8:99012141-99019661 (+)
JF1/MsJ	ENSUMUG00000015687	lncRNA gene	Chr8:108471499-108479017 (+)
LP/J	ENSMUSG00230008447	lncRNA gene	Chr8:109818799-109826318 (+)
NOD/ShiLtJ	ENSMUSG00190013844	lncRNA gene	Chr8:100168452-100175982 (+)
NZO/HlLtJ	ENSMUSG00225023059	lncRNA gene	Chr8:113169308-113176832 (+)
PWK/PhJ	ENSLUMG00010004188	lncRNA gene	Chr8:99972234-99980441 (+)
SPRET/EiJ	ENSMSPG00010040978	lncRNA gene	Chr8:102090845-102097393 (+)
WSB/EiJ	ENSIUOG00005006301	lncRNA gene	Chr8:100848511-100856095 (+)

Homology

• Gene Tree
  9230110F11Rik
  

Expression

• Assay Results
  653
• Tissues
  54
• cDNA Data
  4
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000110497 (Evidence)
• NCBI Gene
  320432

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110497	Ensembl Gene Model | MGI Sequence Detail	7012	C57BL/6J
transcript	ENSMUST00000212403	Ensembl | MGI Sequence Detail	1468	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 8

  Developmental Gene Expression 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:171050 Thiagarajan RD, et al., Identification of anchor genes during kidney development defines ontological relationships, molecular subcompartments and regulatory pathways. PLoS One. 2011;6(2):e17286