9930017N22Rik Gene Detail

Summary

• Symbol
  9930017N22Rik
• Name
  RIKEN cDNA 9930017N22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443961
  NCBI Gene: 320403
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:34127090-34130834 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 13.98 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443961	lncRNA gene	Chr15:34127090-34130834 (+)
129S1/SvImJ	ENSMUSG00200028337	unclassified gene	Chr15:31118054-31121483 (+)
A/J	ENSMUSG00195037490	unclassified gene	Chr15:31047485-31051224 (+)
AKR/J	ENSMUSG00220030483	unclassified gene	Chr15:30950309-30954048 (+)
BALB/cJ	ENSMUSG00180033203	unclassified gene	Chr15:31004140-31007879 (+)
C3H/HeJ	ENSMUSG00175027208	unclassified gene	Chr15:31190563-31194302 (+)
C57BL/6NJ	ENSMUSG00215020217	unclassified gene	Chr15:31035851-31039595 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011282	unclassified gene	Chr15:31068453-31072156 (+)
CBA/J	ENSMUSG00210018134	unclassified gene	Chr15:31141195-31144939 (+)
DBA/2J	ENSMUSG00185034677	unclassified gene	Chr15:31125945-31129684 (+)
FVB/NJ	ENSMUSG00205031833	unclassified gene	Chr15:31005306-31009045 (+)
JF1/MsJ	ENSUMUG00000036058	unclassified gene	Chr15:31037100-31040514 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190031395	unclassified gene	Chr15:31081802-31085226 (+)
NZO/HlLtJ	ENSMUSG00225032224	unclassified gene	Chr15:34817422-34821161 (+)
PWK/PhJ	ENSLUMG00010034074	unclassified gene	Chr15:31178594-31181936 (+)
SPRET/EiJ	ENSMSPG00010013310	unclassified gene	Chr15:31791310-31794629 (+)
WSB/EiJ	ENSIUOG00005032506	unclassified gene	Chr15:31143021-31146754 (+)

Homology

• Gene Tree
  9930017N22Rik
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000115276 (Evidence)
• NCBI Gene
  320403

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115276	Ensembl Gene Model | MGI Sequence Detail	3745	C57BL/6J
transcript	AK036847	GenBank | ENA | DDBJ | MGI Sequence Detail	2830	C57BL/6J

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563