A330023F24Rik Gene Detail

Summary

• Symbol
  A330023F24Rik
• Name
  RIKEN cDNA A330023F24 gene
• Synonyms
  C030002C11Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2443958
  NCBI Gene: 320977
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:194699707-194720216 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 98.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  293 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443958	lncRNA gene	Chr1:194658636-194720216 (+)
129S1/SvImJ	ENSMUSG00200004972	lncRNA gene	Chr1:192451969-192513559 (+)
A/J	ENSMUSG00195008774	lncRNA gene	Chr1:192034528-192096180 (+)
AKR/J	ENSMUSG00220004987	lncRNA gene	Chr1:191281937-191343490 (+)
BALB/cJ	ENSMUSG00180018844	lncRNA gene	Chr1:192101489-192163041 (+)
C3H/HeJ	ENSMUSG00175023193	lncRNA gene	Chr1:192308619-192370259 (+)
C57BL/6NJ	ENSMUSG00215020952	lncRNA gene	Chr1:191495014-191556570 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013267	unclassified non-coding RNA gene	Chr1:185254279-185314614 (+)
CAST/EiJ	ENSTCUG00005002147	lncRNA gene	Chr1:190060421-190121994 (+)
CBA/J	ENSMUSG00210003559	lncRNA gene	Chr1:191967420-192029035 (+)
DBA/2J	ENSMUSG00185011040	lncRNA gene	Chr1:196568183-196629830 (+)
FVB/NJ	ENSMUSG00205004633	lncRNA gene	Chr1:190936538-190998139 (+)
JF1/MsJ	ENSUMUG00000009133	lncRNA gene	Chr1:195543071-195604483 (+)
LP/J	ENSMUSG00230002297	lncRNA gene	Chr1:196070832-196132424 (+)
NOD/ShiLtJ	ENSMUSG00190033570	lncRNA gene	Chr1:191937446-191999013 (+)
NZO/HlLtJ	ENSMUSG00225016362	lncRNA gene	Chr1:199835468-199897058 (+)
PWK/PhJ	ENSLUMG00010006526	lncRNA gene	Chr1:190786168-190847737 (+)
SPRET/EiJ	ENSMSPG00010024764	lncRNA gene	Chr1:194308877-194370100 (+)
WSB/EiJ	ENSIUOG00005005049	lncRNA gene	Chr1:191259152-191320754 (+)

Homology

• Gene Tree
  A330023F24Rik
  

Expression

• Assay Results
  597
• cDNA Data
  19

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  59
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000096929 (Evidence)
• NCBI Gene
  320977

Representative Sequences			Length	Strain/Species
genomic	320977	NCBI Gene Model | MGI Sequence Detail	20510	C57BL/6J
transcript	NR_015566	RefSeq | MGI Sequence Detail	5195	Not Specified
polypeptide	Q3TB91	UniProt | EBI | MGI Sequence Detail	94	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 20

  Genomic 1

  cDNA 19

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:2445163

References

• Summaries
  All 13
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A330023F24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10859	Chr1:194699458-194699489 (+)	-233 bp
Tssr10860	Chr1:194699724-194699739 (+)	25 bp
Tssr10861	Chr1:194700903-194700908 (+)	1,199 bp
Tssr10862	Chr1:194716494-194716535 (+)	16,808 bp