A330023F24Rik Gene Detail

Summary

• Symbol
  A330023F24Rik
• Name
  RIKEN cDNA A330023F24 gene
• Synonyms
  C030002C11Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2443958
  NCBI Gene: 320977
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:194699707-194720216 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 98.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443958	lncRNA gene	Chr1:194658654-194720216 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015128	unclassified non-coding RNA gene	Chr1:202157644-202219429 (+)
A/J	MGP_AJ_G0015102	unclassified non-coding RNA gene	Chr1:193854094-193916547 (+)
AKR/J	MGP_AKRJ_G0015065	unclassified non-coding RNA gene	Chr1:199587884-199651553 (+)
BALB/cJ	MGP_BALBcJ_G0015065	unclassified non-coding RNA gene	Chr1:194557870-194619782 (+)
C3H/HeJ	MGP_C3HHeJ_G0014888	unclassified non-coding RNA gene	Chr1:200478592-200540318 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015521	unclassified non-coding RNA gene	Chr1:208522529-208588098 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013267	unclassified non-coding RNA gene	Chr1:185254279-185314614 (+)
CAST/EiJ	MGP_CASTEiJ_G0014442	unclassified non-coding RNA gene	Chr1:200043729-200107599 (+)
CBA/J	MGP_CBAJ_G0014867	unclassified non-coding RNA gene	Chr1:216214663-216283706 (+)
DBA/2J	MGP_DBA2J_G0014960	unclassified non-coding RNA gene	Chr1:192582912-192644000 (+)
FVB/NJ	MGP_FVBNJ_G0014971	unclassified non-coding RNA gene	Chr1:190661799-190723076 (+)
LP/J	MGP_LPJ_G0015042	unclassified non-coding RNA gene	Chr1:203300657-203360901 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014998	unclassified non-coding RNA gene	Chr1:222867244-222930907 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015560	unclassified non-coding RNA gene	Chr1:199443942-199506801 (+)
PWK/PhJ	MGP_PWKPhJ_G0014234	unclassified non-coding RNA gene	Chr1:191884806-191946627 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014022	unclassified non-coding RNA gene	Chr1:198485608-198549512 (+)
WSB/EiJ	MGP_WSBEiJ_G0014545	unclassified non-coding RNA gene	Chr1:199719074-199782781 (+)

Homology

• Gene Tree
  A330023F24Rik
  

Expression

• Assay Results
  706
• cDNA Data
  19

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000096929 (Evidence)
• NCBI Gene
  320977

Representative Sequences			Length	Strain/Species
genomic	320977	NCBI Gene Model | MGI Sequence Detail	20510	C57BL/6J
transcript	NR_015566	RefSeq | MGI Sequence Detail	5195	Not Specified
polypeptide	Q3TB91	UniProt | EBI | MGI Sequence Detail	94	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 20

  Genomic 1

  cDNA 19

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:2445163

References

• Summaries
  All 12
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A330023F24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10859	Chr1:194699458-194699489 (+)	-233 bp
Tssr10860	Chr1:194699724-194699739 (+)	25 bp
Tssr10861	Chr1:194700903-194700908 (+)	1,199 bp
Tssr10862	Chr1:194716494-194716535 (+)	16,808 bp