E330035G20Rik Gene Detail

Summary

• Symbol
  E330035G20Rik
• Name
  RIKEN cDNA E330035G20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443932
  NCBI Gene: 320390
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:112357960-112372246 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  627 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443932	lncRNA gene	Chr12:112357960-112372246 (-)
129S1/SvImJ	ENSMUSG00200027480	lncRNA gene	Chr12:104136235-104150527 (-)
A/J	ENSMUSG00195045917	lncRNA gene	Chr12:106658807-106672542 (-)
AKR/J	ENSMUSG00220040888	lncRNA gene	Chr12:104556364-104570071 (-)
BALB/cJ	ENSMUSG00180052074	lncRNA gene	Chr12:105899368-105913660 (-)
C3H/HeJ	ENSMUSG00175046355	lncRNA gene	Chr12:108472712-108486419 (-)
C57BL/6NJ	ENSMUSG00215051297	lncRNA gene	Chr12:105172336-105186628 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042384	lncRNA gene	Chr12:104649815-104664188 (-)
CBA/J	ENSMUSG00210035771	lncRNA gene	Chr12:105534122-105547831 (-)
DBA/2J	ENSMUSG00185035636	lncRNA gene	Chr12:107357624-107371359 (-)
FVB/NJ	ENSMUSG00205042693	lncRNA gene	Chr12:104580227-104593958 (-)
JF1/MsJ	ENSUMUG00000035310	lncRNA gene	Chr12:112133091-112147392 (-)
LP/J	ENSMUSG00230045444	lncRNA gene	Chr12:114400735-114415025 (-)
NOD/ShiLtJ	ENSMUSG00190048822	lncRNA gene	Chr12:80633993-80648283 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010051747	lncRNA gene	Chr12:105583380-105597666 (-)
SPRET/EiJ	ENSMSPG00010020964	lncRNA gene	Chr12:107861266-107875520 (-)
WSB/EiJ	ENSIUOG00005040052	lncRNA gene	Chr12:104571362-104585093 (-)

Homology

• Gene Tree
  E330035G20Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000113120 (Evidence)
• NCBI Gene
  320390

Representative Sequences			Length	Strain/Species
genomic	320390	NCBI Gene Model | MGI Sequence Detail	14287	C57BL/6J
transcript	NR_166919	RefSeq | MGI Sequence Detail	3596	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for E330035G20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117863	Chr12:112372158-112372167 (-)	83 bp