C130051F05Rik Gene Detail

Summary

• Symbol
  C130051F05Rik
• Name
  RIKEN cDNA C130051F05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443856
  NCBI Gene: 320348
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:78260601-78264438 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443856	lncRNA gene	Chr13:78260601-78264438 (+)
129S1/SvImJ	ENSMUSG00200006025	unclassified gene	Chr13:72668987-72672825 (+)
A/J	ENSMUSG00195026068	unclassified gene	Chr13:73215103-73218940 (+)
AKR/J	ENSMUSG00220016714	unclassified gene	Chr13:71752438-71756276 (+)
BALB/cJ	ENSMUSG00180001476	unclassified gene	Chr13:73711795-73715632 (+)
C3H/HeJ	ENSMUSG00175019160	unclassified gene	Chr13:73953483-73957322 (+)
C57BL/6NJ	ENSMUSG00215002532	unclassified gene	Chr13:73835617-73839454 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004027	unclassified gene	Chr13:73223582-73227421 (+)
CBA/J	ENSMUSG00210005785	unclassified gene	Chr13:73242399-73246238 (+)
DBA/2J	ENSMUSG00185019163	unclassified gene	Chr13:76928088-76931927 (+)
FVB/NJ	ENSMUSG00205014371	unclassified gene	Chr13:72709735-72713572 (+)
JF1/MsJ	ENSUMUG00000033315	unclassified gene	Chr13:76689915-76693756 (+)
LP/J	ENSMUSG00230028101	unclassified gene	Chr13:86908830-86912667 (+)
NOD/ShiLtJ	ENSMUSG00190008771	unclassified gene	Chr13:73259416-73263255 (+)
NZO/HlLtJ	ENSMUSG00225028416	unclassified gene	Chr13:79431933-79435770 (+)
PWK/PhJ	ENSLUMG00010014437	unclassified gene	Chr13:72829361-72833181 (+)
SPRET/EiJ	ENSMSPG00010001400	unclassified gene	Chr13:73675028-73678861 (+)
WSB/EiJ	ENSIUOG00005017679	unclassified gene	Chr13:72500640-72504479 (+)

Homology

• Gene Tree
  C130051F05Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000114605 (Evidence)
• NCBI Gene
  320348

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114605	Ensembl Gene Model | MGI Sequence Detail	3838	C57BL/6J
transcript	AK081609	GenBank | ENA | DDBJ | MGI Sequence Detail	2291	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573