Mir181a-1hg Gene Detail

Summary

• Symbol
  Mir181a-1hg
• Name
  Mir181a-1 and Mir181b-1 host gene
• Synonyms
  A430106G13Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2443823
  NCBI Gene: 320327
• Alliance
  genome feature page
• Transcription Start Sites
  23 TSS

Location &
Maps

• Sequence Map
  Chr1:137826192-137937516 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2920 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443823	lncRNA gene	Chr1:137826192-137937516 (+)
129S1/SvImJ	ENSMUSG00200008378	lncRNA gene	Chr1:135526616-135530005 (+)
A/J	ENSMUSG00195016767	lncRNA gene	Chr1:134616954-134620389 (+)
AKR/J	ENSMUSG00220003446	lncRNA gene	Chr1:134473720-134477107 (+)
BALB/cJ	ENSMUSG00180011389	lncRNA gene	Chr1:135123469-135126856 (+)
C3H/HeJ	ENSMUSG00175006790	lncRNA gene	Chr1:134834580-134838011 (+)
C57BL/6NJ	ENSMUSG00215020401	lncRNA gene	Chr1:134825376-134828765 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004513	lincRNA gene	Chr1:129534585-129537941 (+)
CAST/EiJ	ENSTCUG00005013360	lncRNA gene	Chr1:133758543-133761976 (+)
CBA/J	ENSMUSG00210014307	lncRNA gene	Chr1:134780521-134783952 (+)
DBA/2J	ENSMUSG00185034025	lncRNA gene	Chr1:139137916-139141317 (+)
FVB/NJ	ENSMUSG00205002537	lncRNA gene	Chr1:134103855-134107252 (+)
JF1/MsJ	ENSUMUG00000052152	lncRNA gene	Chr1:138244840-138248264 (+)
LP/J	ENSMUSG00230039850	lncRNA gene	Chr1:138657729-138661116 (+)
NOD/ShiLtJ	ENSMUSG00190003035	lncRNA gene	Chr1:134770702-134774099 (+)
NZO/HlLtJ	ENSMUSG00225020468	lncRNA gene	Chr1:142424887-142428274 (+)
PWK/PhJ	ENSLUMG00010002013	lncRNA gene	Chr1:133863216-133866627 (+)
SPRET/EiJ	ENSMSPG00010012558	lncRNA gene	Chr1:136717680-136721124 (+)
WSB/EiJ	ENSIUOG00005030005	lncRNA gene	Chr1:134568336-134571743 (+)

Homology

• Gene Tree
  Mir181a-1hg
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Endonuclease-mediated
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Mir181a-1hg
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  1

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  65

• Ensembl
  ENSMUSG00000098206 (Evidence)
• NCBI Gene
  320327

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098206	Ensembl Gene Model | MGI Sequence Detail	111325	C57BL/6J
transcript	ENSMUST00000193770	Ensembl | MGI Sequence Detail	3868	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:6324227

References

• Summaries
  All 15

  Gene Ontology 1

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for Mir181a-1hg:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9105	Chr1:137828918-137828928 (+)	2,731 bp
Tssr9106	Chr1:137833768-137833797 (+)	7,591 bp
Tssr9107	Chr1:137833824-137833835 (+)	7,638 bp
Tssr9108	Chr1:137834499-137834508 (+)	8,312 bp
Tssr9109	Chr1:137834521-137834530 (+)	8,334 bp
Tssr9110	Chr1:137834543-137834563 (+)	8,361 bp
Tssr9111	Chr1:137834581-137834595 (+)	8,396 bp
Tssr9112	Chr1:137834764-137834765 (+)	8,573 bp
Tssr9113	Chr1:137836650-137836687 (+)	10,477 bp
Tssr9114	Chr1:137840591-137840596 (+)	14,402 bp
Tssr9115	Chr1:137844311-137844318 (+)	18,123 bp
Tssr9116	Chr1:137846511-137846519 (+)	20,323 bp
Tssr9117	Chr1:137848421-137848432 (+)	22,235 bp
Tssr9118	Chr1:137848625-137848638 (+)	22,440 bp
Tssr9122	Chr1:137859485-137859502 (+)	33,302 bp
Tssr9123	Chr1:137859523-137859534 (+)	33,337 bp
Tssr9124	Chr1:137859590-137859601 (+)	33,404 bp
Tssr9126	Chr1:137870894-137870926 (+)	44,718 bp
Tssr9127	Chr1:137873743-137873747 (+)	47,553 bp
Tssr9130	Chr1:137889208-137889215 (+)	63,020 bp
Tssr232	Chr1:137894534-137894537 (+)	68,344 bp
Tssr9134	Chr1:137895491-137895500 (+)	69,304 bp
Tssr9138	Chr1:137902369-137902377 (+)	76,181 bp