E530011L22Rik Gene Detail

Summary

• Symbol
  E530011L22Rik
• Name
  RIKEN cDNA E530011L22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443770
  NCBI Gene: 320301
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:121585706-121589009 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 72.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443770	lncRNA gene	Chr9:121583728-121589034 (-)
129S1/SvImJ	ENSMUSG00200031997	lncRNA gene	Chr9:118704323-118709605 (-)
A/J	ENSMUSG00195029081	lncRNA gene	Chr9:117867349-117872635 (-)
AKR/J	ENSMUSG00220019691	lncRNA gene	Chr9:118321491-118326764 (-)
BALB/cJ	ENSMUSG00180029784	lncRNA gene	Chr9:118404363-118409650 (-)
C3H/HeJ	ENSMUSG00175020231	lncRNA gene	Chr9:118647777-118653062 (-)
C57BL/6NJ	ENSMUSG00215035447	lncRNA gene	Chr9:118536677-118541958 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002103	unclassified gene	Chr9:117123933-117127961 (-)
CAST/EiJ	ENSTCUG00005017022	lncRNA gene	Chr9:118244176-118249456 (-)
CBA/J	ENSMUSG00210044862	lncRNA gene	Chr9:118360284-118365556 (-)
DBA/2J	ENSMUSG00185018343	lncRNA gene	Chr9:118694497-118699769 (-)
FVB/NJ	ENSMUSG00205034470	lncRNA gene	Chr9:118536091-118541375 (-)
JF1/MsJ	ENSUMUG00000051883	lncRNA gene	Chr9:118523980-118529240 (-)
LP/J	ENSMUSG00230038430	lncRNA gene	Chr9:118843437-118848718 (-)
NOD/ShiLtJ	ENSMUSG00190015366	lncRNA gene	Chr9:118300645-118305926 (-)
NZO/HlLtJ	ENSMUSG00225023961	lncRNA gene	Chr9:119107706-119112987 (-)
PWK/PhJ	ENSLUMG00010038772	lncRNA gene	Chr9:118411627-118416886 (-)
SPRET/EiJ	ENSMSPG00010024794	lncRNA gene	Chr9:120117737-120122985 (-)
WSB/EiJ	ENSIUOG00005022607	lncRNA gene	Chr9:117727781-117733056 (-)

Homology

• Gene Tree
  E530011L22Rik
  

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1

• Ensembl
  ENSMUSG00000097820 (Evidence)
• NCBI Gene
  320301

Representative Sequences			Length	Strain/Species
genomic	320301	NCBI Gene Model | MGI Sequence Detail	3304	C57BL/6J
transcript	NR_033503	RefSeq | MGI Sequence Detail	3304	C57BL/6

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for E530011L22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92066	Chr9:121588969-121588986 (-)	31 bp