E030013I19Rik Gene Detail

Summary

• Symbol
  E030013I19Rik
• Name
  RIKEN cDNA E030013I19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443735
  NCBI Gene: 338535
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr2:12306057-12317126 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 9.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  532 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443735	lncRNA gene	Chr2:12305757-12317126 (+)
129S1/SvImJ	ENSMUSG00200032775	lncRNA gene	Chr2:9200202-9211559 (+)
A/J	ENSMUSG00195020303	lncRNA gene	Chr2:9325507-9336876 (+)
AKR/J	ENSMUSG00220007005	lncRNA gene	Chr2:9290454-9301813 (+)
BALB/cJ	ENSMUSG00180034948	lncRNA gene	Chr2:9375306-9386669 (+)
C3H/HeJ	ENSMUSG00175017972	lncRNA gene	Chr2:9309627-9320986 (+)
C57BL/6NJ	ENSMUSG00215020719	lncRNA gene	Chr2:9389519-9400888 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003122	antisense lncRNA gene	Chr2:8865683-8877138 (+)
CAST/EiJ	ENSTCUG00005004994	lncRNA gene	Chr2:9173565-9184942 (+)
CBA/J	ENSMUSG00210029153	lncRNA gene	Chr2:9355624-9366971 (+)
DBA/2J	ENSMUSG00185012807	lncRNA gene	Chr2:9270593-9281956 (+)
FVB/NJ	ENSMUSG00205037998	lncRNA gene	Chr2:9260908-9272263 (+)
JF1/MsJ	ENSUMUG00000004844	lncRNA gene	Chr2:9214650-9215992 (+)
LP/J	ENSMUSG00230020820	lncRNA gene	Chr2:11212543-11223898 (+)
NOD/ShiLtJ	ENSMUSG00190006710	lncRNA gene	Chr2:9312812-9324109 (+)
NZO/HlLtJ	ENSMUSG00225002168	lncRNA gene	Chr2:18962676-18974035 (+)
PWK/PhJ	ENSLUMG00010033201	lncRNA gene	Chr2:9325000-9326343 (+)
SPRET/EiJ	ENSMSPG00010031689	lncRNA gene	Chr2:9462354-9473649 (+)
WSB/EiJ	ENSIUOG00005024893	lncRNA gene	Chr2:9348265-9359564 (+)

Homology

• Gene Tree
  E030013I19Rik
  

Expression

• Assay Results
  597
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000086843 (Evidence)
• NCBI Gene
  338535

Representative Sequences			Length	Strain/Species
genomic	338535	NCBI Gene Model | MGI Sequence Detail	11070	C57BL/6J
transcript	NR_040353	RefSeq | MGI Sequence Detail	2773	C57BL/6

Molecular
Reagents

• All nucleic 9

  cDNA 9

References

• Summaries
  All 8
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for E030013I19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16173	Chr2:12305489-12305498 (+)	-563 bp
Tssr16174	Chr2:12305605-12305645 (+)	-432 bp
Tssr16175	Chr2:12305830-12305843 (+)	-220 bp
Tssr16176	Chr2:12306019-12306028 (+)	-33 bp
Tssr16177	Chr2:12306040-12306061 (+)	-6 bp
Tssr16178	Chr2:12306066-12306077 (+)	15 bp
Tssr16179	Chr2:12306114-12306124 (+)	62 bp