A130012E19Rik Gene Detail

Summary

• Symbol
  A130012E19Rik
• Name
  RIKEN cDNA A130012E19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443640
  NCBI Gene: 320235
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:115230655-115233789 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443640	lncRNA gene	Chr10:115230655-115233789 (+)
129S1/SvImJ	ENSMUSG00200011583	unclassified gene	Chr10:111638063-111641195 (+)
A/J	ENSMUSG00195008597	unclassified gene	Chr10:112070720-112073854 (+)
AKR/J	ENSMUSG00220026058	unclassified gene	Chr10:111646414-111649548 (+)
BALB/cJ	ENSMUSG00180026620	unclassified gene	Chr10:112087735-112090869 (+)
C3H/HeJ	ENSMUSG00175015819	unclassified gene	Chr10:112034581-112037715 (+)
C57BL/6NJ	ENSMUSG00215013082	unclassified gene	Chr10:111730989-111734123 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011612	unclassified gene	Chr10:111065628-111068916 (+)
CBA/J	ENSMUSG00210011801	unclassified gene	Chr10:111884334-111887468 (+)
DBA/2J	ENSMUSG00185025492	unclassified gene	Chr10:112007245-112010379 (+)
FVB/NJ	ENSMUSG00205010912	unclassified gene	Chr10:111320328-111323462 (+)
JF1/MsJ	ENSUMUG00000020519	unclassified gene	Chr10:113328683-113331818 (+)
LP/J	ENSMUSG00230026322	unclassified gene	Chr10:113958712-113961846 (+)
NOD/ShiLtJ	ENSMUSG00190021001	unclassified gene	Chr10:112119432-112122566 (+)
NZO/HlLtJ	ENSMUSG00225018189	unclassified gene	Chr10:118213033-118216167 (+)
PWK/PhJ	ENSLUMG00010014324	unclassified gene	Chr10:111723921-111727056 (+)
SPRET/EiJ	ENSMSPG00010017737	unclassified gene	Chr10:113632847-113636302 (+)
WSB/EiJ	ENSIUOG00005010478	unclassified gene	Chr10:111723995-111727134 (+)

Homology

• Gene Tree
  A130012E19Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000112822 (Evidence)
• NCBI Gene
  320235

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112822	Ensembl Gene Model | MGI Sequence Detail	3135	C57BL/6J
transcript	AK038209	GenBank | ENA | DDBJ | MGI Sequence Detail	4379	C57BL/6J

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A130012E19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95818	Chr10:115229397-115229404 (+)	-1,254 bp