9330121K16Rik Gene Detail

Summary

• Symbol
  9330121K16Rik
• Name
  RIKEN cDNA 9330121K16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443625
  NCBI Gene: 320227
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:55526284-55530169 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  193 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443625	lncRNA gene	Chr8:55526284-55530169 (+)
129S1/SvImJ	ENSMUSG00200007366	unclassified gene	Chr8:50614513-50618398 (+)
A/J	ENSMUSG00195012840	unclassified gene	Chr8:51116236-51120121 (+)
AKR/J	ENSMUSG00220005832	unclassified gene	Chr8:50943474-50947359 (+)
BALB/cJ	ENSMUSG00180014214	unclassified gene	Chr8:50693972-50697857 (+)
C3H/HeJ	ENSMUSG00175007746	unclassified gene	Chr8:50870709-50874594 (+)
C57BL/6NJ	ENSMUSG00215011207	unclassified gene	Chr8:50618673-50622558 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006662	unclassified gene	Chr8:50540806-50544658 (+)
CBA/J	ENSMUSG00210009089	unclassified gene	Chr8:50687078-50690961 (+)
DBA/2J	ENSMUSG00185008453	unclassified gene	Chr8:56572707-56576592 (+)
FVB/NJ	ENSMUSG00205002801	unclassified gene	Chr8:49867359-49871251 (+)
JF1/MsJ	ENSUMUG00000006498	unclassified gene	Chr8:59111361-59115220 (+)
JF1/MsJ	ENSUMUG00000005442	unclassified gene	Chr8:58188483-58192342 (+)
LP/J	ENSMUSG00230006685	unclassified gene	Chr8:60234104-60237989 (+)
NOD/ShiLtJ	ENSMUSG00190009914	unclassified gene	Chr8:50738919-50742804 (+)
NZO/HlLtJ	ENSMUSG00225030955	unclassified gene	Chr8:63797077-63800960 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010014674	unclassified gene	Chr8:51445413-51449276 (+)
WSB/EiJ	ENSIUOG00005016952	unclassified gene	Chr8:51547268-51551158 (+)

Homology

• Gene Tree
  9330121K16Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000110249 (Evidence)
• NCBI Gene
  320227

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110249	Ensembl Gene Model | MGI Sequence Detail	3886	C57BL/6J
transcript	AK033941	GenBank | ENA | DDBJ | MGI Sequence Detail	3909	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573