A830082K12Rik Gene Detail

Summary

• Symbol
  A830082K12Rik
• Name
  RIKEN cDNA A830082K12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443527
  NCBI Gene: 320174
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS
• Regulated by
  Rr695561 (1 regulatory region)

Location &
Maps

• Sequence Map
  Chr13:78346136-78384683 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 41.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  943 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443527	lncRNA gene	Chr13:78346078-78427510 (+)
129S1/SvImJ	ENSMUSG00200006037	lncRNA gene	Chr13:72755008-72834874 (+)
A/J	ENSMUSG00195026105	lncRNA gene	Chr13:73300649-73382036 (+)
AKR/J	ENSMUSG00220016726	lncRNA gene	Chr13:71838452-71919864 (+)
BALB/cJ	ENSMUSG00180001479	lncRNA gene	Chr13:73797360-73878728 (+)
C3H/HeJ	ENSMUSG00175019189	lncRNA gene	Chr13:74039481-74119870 (+)
C57BL/6NJ	ENSMUSG00215002537	lncRNA gene	Chr13:73921159-74004739 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002834	antisense lncRNA gene	Chr13:72730018-72807485 (+)
CAST/EiJ	ENSTCUG00005004046	lncRNA gene	Chr13:73308995-73380359 (+)
CBA/J	ENSMUSG00210005793	lncRNA gene	Chr13:73328391-73408784 (+)
DBA/2J	ENSMUSG00185019186	lncRNA gene	Chr13:77014076-77094458 (+)
FVB/NJ	ENSMUSG00205014416	lncRNA gene	Chr13:72795179-72874114 (+)
JF1/MsJ	ENSUMUG00000033495	lncRNA gene	Chr13:76768477-76855962 (+)
LP/J	ENSMUSG00230028039	lncRNA gene	Chr13:86994363-87075746 (+)
NOD/ShiLtJ	ENSMUSG00190008786	lncRNA gene	Chr13:73345424-73425825 (+)
NZO/HlLtJ	ENSMUSG00225028391	lncRNA gene	Chr13:79517481-79598878 (+)
PWK/PhJ	ENSLUMG00010014465	lncRNA gene	Chr13:72907945-72990352 (+)
SPRET/EiJ	ENSMSPG00010001393	lncRNA gene	Chr13:73756031-73836583 (+)
WSB/EiJ	ENSIUOG00005017699	lncRNA gene	Chr13:72586657-72667222 (+)

Homology

• Gene Tree
  A830082K12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Transgenic
  1
• Genomic Mutations
  2 involving A830082K12Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  641
• Tissues
  39
• cDNA Data
  7
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  56
• RefSeq
  1

• Ensembl
  ENSMUSG00000087143 (Evidence)
• NCBI Gene
  320174

Representative Sequences			Length	Strain/Species
genomic	320174	NCBI Gene Model | MGI Sequence Detail	38548	C57BL/6J
transcript	NR_045195	RefSeq | MGI Sequence Detail	2305	C57BL/6

Molecular
Reagents

• All nucleic 9

  cDNA 7

  Primer pair 2

  
  

  Microarray probesets 3

References

• Summaries
  All 19

  Developmental Gene Expression 2

  Phenotypes 7
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:387690 Lefevre MA, et al., Morphological evidence suggestive of a hierarchical mode of glial cell diversification and intrinsic developmental plasticity within the murine enteric nervous system. Front Neurosci. 2025;19:1701574

A830082K12Rik expression regulated by:

Feature	Feature Type	Location	Reference
Rr695561, regulatory region 695561	silencer	Chr13:78400149-78400824	J:236786

TSS for A830082K12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120459	Chr13:78350074-78350123 (+)	3,963 bp
Tssr120460	Chr13:78350483-78350507 (+)	4,359 bp
Tssr120461	Chr13:78350755-78350780 (+)	4,632 bp
Tssr120462	Chr13:78359590-78359598 (+)	13,458 bp
Tssr120463	Chr13:78383300-78383308 (+)	37,168 bp