D130019J16Rik Gene Detail

Summary

• Symbol
  D130019J16Rik
• Name
  RIKEN cDNA D130019J16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443523
  NCBI Gene: 320171
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:137862927-137865084 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443523	lncRNA gene	Chr1:137862927-137865084 (+)
129S1/SvImJ	ENSMUSG00200008820	unclassified gene	Chr1:135495237-135497408 (+)
A/J	ENSMUSG00195016699	unclassified gene	Chr1:134585591-134587749 (+)
AKR/J	ENSMUSG00220003615	unclassified gene	Chr1:134442375-134444533 (+)
BALB/cJ	ENSMUSG00180011793	unclassified gene	Chr1:135092126-135094284 (+)
C3H/HeJ	ENSMUSG00175006870	unclassified gene	Chr1:134803225-134805382 (+)
C57BL/6NJ	ENSMUSG00215024961	unclassified gene	Chr1:134794027-134796185 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000442	unclassified gene	Chr1:129502756-129504759 (+)
CAST/EiJ	ENSTCUG00005013309	unclassified gene	Chr1:133727236-133729424 (+)
CBA/J	ENSMUSG00210014598	unclassified gene	Chr1:134749165-134751323 (+)
DBA/2J	ENSMUSG00185033727	unclassified gene	Chr1:139106592-139108768 (+)
FVB/NJ	ENSMUSG00205002775	unclassified gene	Chr1:134072492-134074666 (+)
JF1/MsJ	ENSUMUG00000049617	unclassified gene	Chr1:138211239-138213381 (+)
LP/J	ENSMUSG00230040346	unclassified gene	Chr1:138626387-138628544 (+)
NOD/ShiLtJ	ENSMUSG00190002916	unclassified gene	Chr1:134739340-134741511 (+)
NZO/HlLtJ	ENSMUSG00225020893	unclassified gene	Chr1:142393545-142395702 (+)
PWK/PhJ	ENSLUMG00010002043	unclassified gene	Chr1:133831368-133833506 (+)
SPRET/EiJ	ENSMSPG00010012431	unclassified gene	Chr1:136687688-136689706 (+)
WSB/EiJ	ENSIUOG00005029598	unclassified gene	Chr1:134536968-134539127 (+)

Homology

• Gene Tree
  D130019J16Rik
  

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000104145 (Evidence)
• NCBI Gene
  320171

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104145	Ensembl Gene Model | MGI Sequence Detail	2158	C57BL/6J
transcript	AK051229	GenBank | ENA | DDBJ | MGI Sequence Detail	2020	C57BL/6J

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 7
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for D130019J16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9125	Chr1:137864763-137864768 (+)	1,839 bp