A130048G24Rik Gene Detail

Summary

• Symbol
  A130048G24Rik
• Name
  RIKEN cDNA A130048G24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443520
  NCBI Gene: 320170
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:54953004-54955753 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443520	lncRNA gene	Chr1:54953004-54955753 (-)
129S1/SvImJ	ENSMUSG00200018684	unclassified gene	Chr1:52427990-52430739 (-)
A/J	ENSMUSG00195030713	unclassified gene	Chr1:51984711-51987461 (-)
AKR/J	ENSMUSG00220041473	unclassified gene	Chr1:52071730-52074478 (-)
BALB/cJ	ENSMUSG00180014185	unclassified gene	Chr1:52247258-52250006 (-)
C3H/HeJ	ENSMUSG00175001241	unclassified gene	Chr1:52359534-52362283 (-)
C57BL/6NJ	ENSMUSG00215036463	unclassified gene	Chr1:52281600-52284349 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000280	unclassified gene	Chr1:48819385-48822094 (-)
CAST/EiJ	ENSTCUG00005013711	unclassified gene	Chr1:52181006-52183734 (-)
CBA/J	ENSMUSG00210054165	unclassified gene	Chr1:52046423-52049172 (-)
DBA/2J	ENSMUSG00185055006	unclassified gene	Chr1:53166032-53168781 (-)
FVB/NJ	ENSMUSG00205022885	unclassified gene	Chr1:52008111-52010860 (-)
JF1/MsJ	ENSUMUG00000046755	unclassified gene	Chr1:52124608-52127337 (-)
LP/J	ENSMUSG00230029492	unclassified gene	Chr1:53175143-53177892 (-)
NOD/ShiLtJ	ENSMUSG00190043665	unclassified gene	Chr1:52192302-52195057 (-)
NZO/HlLtJ	ENSMUSG00225009878	unclassified gene	Chr1:56376406-56379155 (-)
PWK/PhJ	ENSLUMG00010025451	unclassified gene	Chr1:51683699-51686424 (-)
SPRET/EiJ	ENSMSPG00010028109	unclassified gene	Chr1:53461796-53464535 (-)
WSB/EiJ	ENSIUOG00005021872	unclassified gene	Chr1:51847662-51850409 (-)

Homology

• Gene Tree
  A130048G24Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000102642 (Evidence)
• NCBI Gene
  320170

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102642	Ensembl Gene Model | MGI Sequence Detail	2750	C57BL/6J
transcript	AK033418	GenBank | ENA | DDBJ | MGI Sequence Detail	2754	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A130048G24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11697	Chr1:54953400-54953408 (-)	2,349 bp