A130050O07Rik Gene Detail

Summary

• Symbol
  A130050O07Rik
• Name
  RIKEN cDNA A130050O07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443458
  NCBI Gene: 320138
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:137854989-137858011 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 60.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443458	lncRNA gene	Chr1:137854989-137858011 (+)
129S1/SvImJ	ENSMUSG00200008816	unclassified gene	Chr1:135487304-135490323 (+)
A/J	ENSMUSG00195016677	unclassified gene	Chr1:134577626-134580646 (+)
AKR/J	ENSMUSG00220003604	unclassified gene	Chr1:134434429-134437451 (+)
BALB/cJ	ENSMUSG00180011787	unclassified gene	Chr1:135084186-135087208 (+)
C3H/HeJ	ENSMUSG00175006867	unclassified gene	Chr1:134795262-134798282 (+)
C57BL/6NJ	ENSMUSG00215024902	unclassified gene	Chr1:134786083-134789106 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000441	unclassified gene	Chr1:129494836-129497883 (+)
CAST/EiJ	ENSTCUG00005013300	unclassified gene	Chr1:133719261-133722293 (+)
CBA/J	ENSMUSG00210014594	unclassified gene	Chr1:134741196-134744216 (+)
DBA/2J	ENSMUSG00185033714	unclassified gene	Chr1:139098634-139101657 (+)
FVB/NJ	ENSMUSG00205002772	unclassified gene	Chr1:134064565-134067585 (+)
JF1/MsJ	ENSUMUG00000049735	unclassified gene	Chr1:138203245-138206284 (+)
LP/J	ENSMUSG00230039885	unclassified gene	Chr1:138618449-138621471 (+)
NOD/ShiLtJ	ENSMUSG00190002914	unclassified gene	Chr1:134731414-134734433 (+)
NZO/HlLtJ	ENSMUSG00225020503	unclassified gene	Chr1:142385600-142388622 (+)
PWK/PhJ	ENSLUMG00010002059	unclassified gene	Chr1:133823354-133826388 (+)
SPRET/EiJ	ENSMSPG00010012417	unclassified gene	Chr1:136679692-136682707 (+)
WSB/EiJ	ENSIUOG00005029589	unclassified gene	Chr1:134528999-134532021 (+)

Homology

• Gene Tree
  A130050O07Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000102277 (Evidence)
• NCBI Gene
  320138

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102277	Ensembl Gene Model | MGI Sequence Detail	3023	C57BL/6J
transcript	AK037803	GenBank | ENA | DDBJ | MGI Sequence Detail	2970	C57BL/6J
polypeptide	Q8CAR5	UniProt | EBI | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582