6030445D17Rik Gene Detail

Summary

• Symbol
  6030445D17Rik
• Name
  RIKEN cDNA 6030445D17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443447
  NCBI Gene: 320133
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:136189561-136191288 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 68.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443447	lncRNA gene	Chr4:136189561-136191288 (+)
129S1/SvImJ	ENSMUSG00200021405	lncRNA gene	Chr4:129607329-129609052 (+)
A/J	ENSMUSG00195045260	lncRNA gene	Chr4:130956800-130958497 (+)
AKR/J	ENSMUSG00220047882	lncRNA gene	Chr4:129950906-129952607 (+)
BALB/cJ	ENSMUSG00180050598	lncRNA gene	Chr4:128589713-128591428 (+)
C3H/HeJ	ENSMUSG00175048106	lncRNA gene	Chr4:129610101-129611802 (+)
C57BL/6NJ	ENSMUSG00215052686	lncRNA gene	Chr4:131130030-131131757 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026662	protein coding gene	Chr4:126134163-126135849 (+)
CAST/EiJ	ENSTCUG00005048760	lncRNA gene	Chr4:130537793-130539504 (+)
CBA/J	ENSMUSG00210053981	lncRNA gene	Chr4:129234006-129235707 (+)
DBA/2J	ENSMUSG00185053576	lncRNA gene	Chr4:130763021-130764738 (+)
FVB/NJ	ENSMUSG00205049267	lncRNA gene	Chr4:129006445-129008160 (+)
JF1/MsJ	ENSUMUG00000048703	lncRNA gene	Chr4:131463744-131465475 (+)
LP/J	ENSMUSG00230041021	lncRNA gene	Chr4:134545520-134547247 (+)
NOD/ShiLtJ	ENSMUSG00190049054	lncRNA gene	Chr4:128995082-128996797 (+)
NZO/HlLtJ	ENSMUSG00225026836	lncRNA gene	Chr4:140500497-140502224 (+)
PWK/PhJ	ENSLUMG00010051258	lncRNA gene	Chr4:128446672-128448369 (+)
SPRET/EiJ	ENSMSPG00010046136	lncRNA gene	Chr4:130518403-130520096 (+)
WSB/EiJ	ENSIUOG00005045290	lncRNA gene	Chr4:128897963-128899664 (+)

Homology

• Gene Tree
  6030445D17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  15
• Gene trapped
  14
• Targeted
  1
• Genomic Mutations
  1 involving 6030445D17Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  19 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• UniProt
  2

• Ensembl
  ENSMUSG00000066178 (Evidence)
• NCBI Gene
  320133

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000066178	Ensembl Gene Model | MGI Sequence Detail	1728	C57BL/6J
transcript	ENSMUST00000084593	Ensembl | MGI Sequence Detail	1728	Not Applicable
polypeptide	Q8CCB8	UniProt | EBI | MGI Sequence Detail	160	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Phenotypes 4
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 6030445D17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39709	Chr4:136189893-136189934 (+)	353 bp