C230086J09Rik Gene Detail

Summary

• Symbol
  C230086J09Rik
• Name
  RIKEN cDNA C230086J09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443423
  NCBI Gene: 320122
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:94034577-94038609 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  303 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443423	lncRNA gene	Chr14:94034577-94038609 (-)
129S1/SvImJ	ENSMUSG00200019936	unclassified gene	Chr14:82535997-82540028 (-)
A/J	ENSMUSG00195011498	unclassified gene	Chr14:82744233-82748292 (-)
AKR/J	ENSMUSG00220008381	unclassified gene	Chr14:82142103-82146163 (-)
BALB/cJ	ENSMUSG00180010065	unclassified gene	Chr14:82234348-82238408 (-)
C3H/HeJ	ENSMUSG00175002682	unclassified gene	Chr14:84100580-84104640 (-)
C57BL/6NJ	ENSMUSG00215004836	unclassified gene	Chr14:82252734-82256766 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016503	unclassified gene	Chr14:83750394-83754433 (-)
CBA/J	ENSMUSG00210004824	unclassified gene	Chr14:82775326-82779385 (-)
DBA/2J	ENSMUSG00185015378	unclassified gene	Chr14:87963899-87967957 (-)
FVB/NJ	ENSMUSG00205010280	unclassified gene	Chr14:81881608-81885666 (-)
JF1/MsJ	ENSUMUG00000013701	unclassified gene	Chr14:98926804-98930836 (-)
LP/J	ENSMUSG00230005240	unclassified gene	Chr14:99801622-99805654 (-)
NOD/ShiLtJ	ENSMUSG00190002462	unclassified gene	Chr14:82498143-82502192 (-)
NZO/HlLtJ	ENSMUSG00225024703	unclassified gene	Chr14:90209790-90213822 (-)
PWK/PhJ	ENSLUMG00010002118	unclassified gene	Chr14:81807703-81811735 (-)
SPRET/EiJ	ENSMSPG00010009375	unclassified gene	Chr14:85553504-85557692 (-)
WSB/EiJ	ENSIUOG00005004492	unclassified gene	Chr14:81784178-81788231 (-)

Homology

• Gene Tree
  C230086J09Rik
  

Expression

• Assay Results
  659
• Tissues
  9
• cDNA Data
  4
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000115471 (Evidence)
• NCBI Gene
  320122

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115471	Ensembl Gene Model | MGI Sequence Detail	4033	C57BL/6J
transcript	AK048966	GenBank | ENA | DDBJ | MGI Sequence Detail	4034	C57BL/6J

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 6

  Developmental Gene Expression 1
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for C230086J09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr129965	Chr14:94035388-94035394 (-)	3,218 bp