E030003E18Rik Gene Detail

Summary

• Symbol
  E030003E18Rik
• Name
  RIKEN cDNA E030003E18 gene
• Synonyms
  1700127G21Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2443348
  NCBI Gene: 320092
• Alliance
  gene page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr19:20470079-20533774 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 13.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1941 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443348	lncRNA gene	Chr19:20470079-20533774 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  4

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  1

• NCBI Gene
  320092

Representative Sequences			Length	Strain/Species
genomic	320092	NCBI Gene Model | MGI Sequence Detail	63696	C57BL/6J
transcript	NR_015502	RefSeq | MGI Sequence Detail	1085	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

Other
Accession IDs

MGI:1925894

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for E030003E18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155471	Chr19:20469581-20469605 (+)	-486 bp
Tssr155472	Chr19:20469629-20469636 (+)	-446 bp
Tssr155473	Chr19:20469941-20469952 (+)	-132 bp
Tssr155474	Chr19:20469970-20469981 (+)	-103 bp
Tssr155475	Chr19:20470027-20470034 (+)	-48 bp
Tssr155476	Chr19:20470042-20470053 (+)	-31 bp
Tssr155477	Chr19:20470058-20470111 (+)	6 bp
Tssr155478	Chr19:20470114-20470149 (+)	53 bp
Tssr155479	Chr19:20470371-20470385 (+)	299 bp
Tssr155480	Chr19:20470401-20470423 (+)	333 bp
Tssr5457	Chr19:20497535-20497536 (+)	27,457 bp