6330415G19Rik Gene Detail

Summary

• Symbol
  6330415G19Rik
• Name
  RIKEN cDNA 6330415G19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443182
  NCBI Gene: 320020
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:23769773-23784268 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 11.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  482 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443182	lncRNA gene	Chr17:23769412-23793062 (+)
129S1/SvImJ	ENSMUSG00200038667	lncRNA gene	Chr17:19192724-19207238 (+)
A/J	ENSMUSG00195039411	lncRNA gene	Chr17:20210916-20225430 (+)
AKR/J	ENSMUSG00220026457	lncRNA gene	Chr17:19267730-19282220 (+)
BALB/cJ	ENSMUSG00180019317	lncRNA gene	Chr17:19493526-19508040 (+)
C3H/HeJ	ENSMUSG00175045534	lncRNA gene	Chr17:19280894-19295384 (+)
C57BL/6NJ	ENSMUSG00215043305	lncRNA gene	Chr17:19277490-19291982 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023397	lncRNA gene	Chr17:19859949-19874466 (+)
CBA/J	ENSMUSG00210041003	lncRNA gene	Chr17:19119761-19134251 (+)
DBA/2J	ENSMUSG00185054068	lncRNA gene	Chr17:21299754-21314270 (+)
FVB/NJ	ENSMUSG00205038705	lncRNA gene	Chr17:19570868-19585358 (+)
JF1/MsJ	ENSUMUG00000057695	lncRNA gene	Chr17:20774214-20788833 (+)
LP/J	ENSMUSG00230055138	lncRNA gene	Chr17:22697672-22712186 (+)
NOD/ShiLtJ	ENSMUSG00190039121	lncRNA gene	Chr17:19199785-19214277 (+)
NZO/HlLtJ	ENSMUSG00225054812	lncRNA gene	Chr17:24620739-24635253 (+)
PWK/PhJ	ENSLUMG00010021749	lncRNA gene	Chr17:18671645-18686388 (+)
SPRET/EiJ	ENSMSPG00010040990	lncRNA gene	Chr17:20026914-20041243 (+)
WSB/EiJ	ENSIUOG00005043043	lncRNA gene	Chr17:19948088-19962574 (+)

Homology

• Gene Tree
  6330415G19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  8
• Gene trapped
  8
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2

• Ensembl
  ENSMUSG00000117322 (Evidence)
• NCBI Gene
  320020

Representative Sequences			Length	Strain/Species
genomic	320020	NCBI Gene Model | MGI Sequence Detail	14496	C57BL/6J
transcript	NR_126484	RefSeq | MGI Sequence Detail	1637	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 6330415G19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142923	Chr17:23783243-23783273 (+)	13,485 bp