D030016M11Rik Gene Detail

Summary

• Symbol
  D030016M11Rik
• Name
  RIKEN cDNA D030016M11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443169
  NCBI Gene: 320016
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:6576130-6577523 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443169	lncRNA gene	Chr11:6576130-6577523 (+)
129S1/SvImJ	ENSMUSG00200034318	lncRNA gene	Chr11:3523227-3524602 (+)
A/J	ENSMUSG00195024757	lncRNA gene	Chr11:3450774-3452157 (+)
AKR/J	ENSMUSG00220009568	lncRNA gene	Chr11:3480307-3481690 (+)
BALB/cJ	ENSMUSG00180029647	lncRNA gene	Chr11:3472729-3474104 (+)
C3H/HeJ	ENSMUSG00175010705	lncRNA gene	Chr11:3456049-3457424 (+)
C57BL/6NJ	ENSMUSG00215031097	lncRNA gene	Chr11:3465520-3466895 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039560	lncRNA gene	Chr11:3534497-3536111 (+)
CBA/J	ENSMUSG00210018402	lncRNA gene	Chr11:3454501-3455876 (+)
DBA/2J	ENSMUSG00185019063	lncRNA gene	Chr11:3552264-3553639 (+)
FVB/NJ	ENSMUSG00205035150	lncRNA gene	Chr11:3437163-3438538 (+)
JF1/MsJ	ENSUMUG00000048981	lncRNA gene	Chr11:3699542-3700925 (+)
LP/J	ENSMUSG00230035663	lncRNA gene	Chr11:4624952-4626327 (+)
NOD/ShiLtJ	ENSMUSG00190042593	lncRNA gene	Chr11:3443242-3444625 (+)
NZO/HlLtJ	ENSMUSG00225026462	lncRNA gene	Chr11:6657128-6658503 (+)
PWK/PhJ	ENSLUMG00010019437	lncRNA gene	Chr11:3450482-3451857 (+)
SPRET/EiJ	ENSMSPG00010008939	lncRNA gene	Chr11:3505372-3506735 (+)
WSB/EiJ	ENSIUOG00005007688	lncRNA gene	Chr11:3462754-3464129 (+)

Homology

• Gene Tree
  D030016M11Rik
  

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000121251 (Evidence)
• NCBI Gene
  320016

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121251	Ensembl Gene Model | MGI Sequence Detail	1394	C57BL/6J
transcript	ENSMUST00000247604	Ensembl | MGI Sequence Detail	1394	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 4
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for D030016M11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100278	Chr11:6576120-6576191 (+)	26 bp