9330111N05Rik Gene Detail

Summary

• Symbol
  9330111N05Rik
• Name
  RIKEN cDNA 9330111N05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443112
  NCBI Gene: 319983
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:81112193-81227976 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 42.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3593 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443112	lncRNA gene	Chr13:81110996-81276987 (+)
129S1/SvImJ	ENSMUSG00200005951	lncRNA gene	Chr13:75550204-75716142 (+)
A/J	ENSMUSG00195025780	lncRNA gene	Chr13:76060152-76226104 (+)
AKR/J	ENSMUSG00220016688	lncRNA gene	Chr13:74607342-74773306 (+)
BALB/cJ	ENSMUSG00180001466	lncRNA gene	Chr13:76562862-76728822 (+)
C3H/HeJ	ENSMUSG00175019718	lncRNA gene	Chr13:76807992-76973976 (+)
C57BL/6NJ	ENSMUSG00215002650	lncRNA gene	Chr13:76688723-76854693 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004981	lincRNA gene	Chr13:75369224-75528746 (+)
CAST/EiJ	ENSTCUG00005004151	lncRNA gene	Chr13:76056596-76211713 (+)
CBA/J	ENSMUSG00210005650	lncRNA gene	Chr13:76098053-76264015 (+)
DBA/2J	ENSMUSG00185018222	lncRNA gene	Chr13:79778337-79944313 (+)
FVB/NJ	ENSMUSG00205014019	lncRNA gene	Chr13:75546850-75712801 (+)
JF1/MsJ	ENSUMUG00000035184	lncRNA gene	Chr13:79555829-79717520 (+)
LP/J	ENSMUSG00230027018	lncRNA gene	Chr13:89764909-89930860 (+)
NOD/ShiLtJ	ENSMUSG00190008819	lncRNA gene	Chr13:76109195-76275159 (+)
NZO/HlLtJ	ENSMUSG00225030481	lncRNA gene	Chr13:82282715-82448641 (+)
PWK/PhJ	ENSLUMG00010014529	lncRNA gene	Chr13:75667874-75828539 (+)
SPRET/EiJ	ENSMSPG00010001361	lncRNA gene	Chr13:76553254-76721518 (+)
WSB/EiJ	ENSIUOG00005017470	lncRNA gene	Chr13:75391503-75565017 (+)

Homology

• Gene Tree
  9330111N05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9330111N05Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  1

• Ensembl
  ENSMUSG00000097098 (Evidence)
• NCBI Gene
  319983

Representative Sequences			Length	Strain/Species
genomic	319983	NCBI Gene Model | MGI Sequence Detail	115784	C57BL/6J
transcript	NR_015587	RefSeq | MGI Sequence Detail	1407	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 9330111N05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120477	Chr13:81111182-81111201 (+)	-1,001 bp
Tssr120478	Chr13:81111223-81111241 (+)	-961 bp