B230323A14Rik Gene Detail

Summary

• Symbol
  B230323A14Rik
• Name
  RIKEN cDNA B230323A14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443084
  NCBI Gene: 319970
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:69668428-69737481 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 38.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1967 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443084	lncRNA gene	Chr9:69666022-69738128 (+)
129S1/SvImJ	ENSMUSG00200044265	lncRNA gene	Chr9:66754499-66826650 (+)
A/J	ENSMUSG00195026974	lncRNA gene	Chr9:66538906-66611120 (+)
AKR/J	ENSMUSG00220041930	lncRNA gene	Chr9:66677747-66749929 (+)
BALB/cJ	ENSMUSG00180018042	lncRNA gene	Chr9:66653277-66725502 (+)
C3H/HeJ	ENSMUSG00175013728	lncRNA gene	Chr9:66666688-66738902 (+)
C57BL/6NJ	ENSMUSG00215035405	lncRNA gene	Chr9:66609578-66681773 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006783	lincRNA gene	Chr9:66934568-67005046 (+)
CAST/EiJ	ENSTCUG00005031995	lncRNA gene	Chr9:66477386-66549354 (+)
CBA/J	ENSMUSG00210014865	lncRNA gene	Chr9:66747435-66819625 (+)
DBA/2J	ENSMUSG00185035229	lncRNA gene	Chr9:66771150-66843359 (+)
FVB/NJ	ENSMUSG00205033058	lncRNA gene	Chr9:67045348-67117528 (+)
JF1/MsJ	ENSUMUG00000038729	lncRNA gene	Chr9:66799625-66871395 (+)
LP/J	ENSMUSG00230028156	lncRNA gene	Chr9:66949660-67021820 (+)
NOD/ShiLtJ	ENSMUSG00190024300	lncRNA gene	Chr9:66874692-66947046 (+)
NZO/HlLtJ	ENSMUSG00225047174	lncRNA gene	Chr9:67077823-67149556 (+)
PWK/PhJ	ENSLUMG00010027612	lncRNA gene	Chr9:66750353-66822316 (+)
SPRET/EiJ	ENSMSPG00010021893	lncRNA gene	Chr9:67839215-67912216 (+)
WSB/EiJ	ENSIUOG00005027112	lncRNA gene	Chr9:66226403-66298784 (+)

Homology

• Gene Tree
  B230323A14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving B230323A14Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  61
• RefSeq
  1

• Ensembl
  ENSMUSG00000097623 (Evidence)
• NCBI Gene
  319970

Representative Sequences			Length	Strain/Species
genomic	319970	NCBI Gene Model | MGI Sequence Detail	69054	C57BL/6J
transcript	NR_040765	RefSeq | MGI Sequence Detail	1635	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for B230323A14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85866	Chr9:69668331-69668349 (+)	-88 bp
Tssr85867	Chr9:69668370-69668375 (+)	-55 bp