4930513N10Rik Gene Detail

Summary

• Symbol
  4930513N10Rik
• Name
  RIKEN cDNA 4930513N10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443064
  NCBI Gene: 319960
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:96533458-96548356 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 47.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  46 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443064	lncRNA gene	Chr8:96533372-96548356 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015722	unclassified non-coding RNA gene	Chr8:97322315-97336823 (+)
A/J	MGP_AJ_G0015700	unclassified non-coding RNA gene	Chr8:93485675-93500216 (+)
AKR/J	MGP_AKRJ_G0015663	unclassified non-coding RNA gene	Chr8:96070433-96084971 (+)
BALB/cJ	MGP_BALBcJ_G0015661	unclassified non-coding RNA gene	Chr8:93579818-93594857 (+)
C3H/HeJ	MGP_C3HHeJ_G0015483	unclassified non-coding RNA gene	Chr8:96777860-96792804 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016116	unclassified non-coding RNA gene	Chr8:100892816-100907198 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013844	unclassified non-coding RNA gene	Chr8:87287293-87299045 (+)
CAST/EiJ	MGP_CASTEiJ_G0015038	unclassified non-coding RNA gene	Chr8:96363488-96377799 (+)
CBA/J	MGP_CBAJ_G0015464	unclassified non-coding RNA gene	Chr8:104174884-104193907 (+)
DBA/2J	MGP_DBA2J_G0015560	unclassified non-coding RNA gene	Chr8:92984705-92999658 (+)
FVB/NJ	MGP_FVBNJ_G0015566	unclassified non-coding RNA gene	Chr8:91943472-91958188 (+)
LP/J	MGP_LPJ_G0015640	unclassified non-coding RNA gene	Chr8:97451152-97467503 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015588	unclassified non-coding RNA gene	Chr8:106393205-106410123 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016158	unclassified non-coding RNA gene	Chr8:96233636-96248133 (+)
PWK/PhJ	MGP_PWKPhJ_G0014819	unclassified non-coding RNA gene	Chr8:92348167-92366227 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014608	unclassified non-coding RNA gene	Chr8:95064590-95082129 (+)
WSB/EiJ	MGP_WSBEiJ_G0015142	unclassified non-coding RNA gene	Chr8:96747384-96762072 (+)

Homology

• Gene Tree
  4930513N10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  73
• Gene trapped
  73
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  707
• Tissues
  1
• cDNA Data
  7
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074136 (Evidence)
• NCBI Gene
  319960

Representative Sequences			Length	Strain/Species
genomic	319960	NCBI Gene Model | MGI Sequence Detail	14899	C57BL/6J
transcript	NR_015574	RefSeq | MGI Sequence Detail	2803	C57BL/6
polypeptide	Q3TTC0	UniProt | EBI | MGI Sequence Detail	193	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:143778 Tamplin OJ, et al., Integrated microarray and ChIP analysis identifies multiple Foxa2 dependent target genes in the notochord. Dev Biol. 2011 Dec 15;360(2):415-25

TSS for 4930513N10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79006	Chr8:96533597-96533614 (+)	148 bp
Tssr79007	Chr8:96533619-96533646 (+)	175 bp