4930513N10Rik Gene Detail

Summary

• Symbol
  4930513N10Rik
• Name
  RIKEN cDNA 4930513N10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443064
  NCBI Gene: 319960
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:96533458-96548356 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 47.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  524 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443064	lncRNA gene	Chr8:96533372-96548385 (+)
129S1/SvImJ	ENSMUSG00200015334	lncRNA gene	Chr8:90895512-90910491 (+)
A/J	ENSMUSG00195004319	lncRNA gene	Chr8:91230377-91245367 (+)
AKR/J	ENSMUSG00220011915	lncRNA gene	Chr8:91267208-91282190 (+)
BALB/cJ	ENSMUSG00180004383	lncRNA gene	Chr8:91132462-91147449 (+)
C3H/HeJ	ENSMUSG00175002780	lncRNA gene	Chr8:91174816-91189817 (+)
C57BL/6NJ	ENSMUSG00215001385	lncRNA gene	Chr8:90805633-90820626 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013844	unclassified non-coding RNA gene	Chr8:87287293-87299045 (+)
CAST/EiJ	ENSTCUG00005017236	lncRNA gene	Chr8:90630450-90644914 (+)
CBA/J	ENSMUSG00210015589	lncRNA gene	Chr8:91110250-91125246 (+)
DBA/2J	ENSMUSG00185024318	lncRNA gene	Chr8:97219108-97234108 (+)
FVB/NJ	ENSMUSG00205017461	lncRNA gene	Chr8:90219905-90234886 (+)
JF1/MsJ	ENSUMUG00000045272	lncRNA gene	Chr8:99586797-99601782 (+)
LP/J	ENSMUSG00230008296	lncRNA gene	Chr8:100880515-100895503 (+)
NOD/ShiLtJ	ENSMUSG00190013311	lncRNA gene	Chr8:91236066-91251046 (+)
NZO/HlLtJ	ENSMUSG00225011478	lncRNA gene	Chr8:104285465-104300442 (+)
PWK/PhJ	ENSLUMG00010044096	lncRNA gene	Chr8:90958717-90974262 (+)
SPRET/EiJ	ENSMSPG00010006433	lncRNA gene	Chr8:92977026-92992015 (+)
WSB/EiJ	ENSIUOG00005006188	lncRNA gene	Chr8:91944260-91959029 (+)

Homology

• Gene Tree
  4930513N10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  73
• Gene trapped
  73
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  598
• Tissues
  1
• cDNA Data
  7
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074136 (Evidence)
• NCBI Gene
  319960

Representative Sequences			Length	Strain/Species
genomic	319960	NCBI Gene Model | MGI Sequence Detail	14899	C57BL/6J
transcript	NR_015574	RefSeq | MGI Sequence Detail	2803	C57BL/6
polypeptide	Q3TTC0	UniProt | EBI | MGI Sequence Detail	193	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:143778 Tamplin OJ, et al., Integrated microarray and ChIP analysis identifies multiple Foxa2 dependent target genes in the notochord. Dev Biol. 2011 Dec 15;360(2):415-25

TSS for 4930513N10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79006	Chr8:96533597-96533614 (+)	148 bp
Tssr79007	Chr8:96533619-96533646 (+)	175 bp