A730011C13Rik Gene Detail

Summary

• Symbol
  A730011C13Rik
• Name
  RIKEN cDNA A730011C13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442973
  NCBI Gene: 319916
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:94901721-94904661 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.74 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  87 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442973	lncRNA gene	Chr3:94901721-94904661 (-)
129S1/SvImJ	ENSMUSG00200046373	lncRNA gene	Chr3:91556739-91559679 (-)
A/J	ENSMUSG00195049808	lncRNA gene	Chr3:91884169-91887109 (-)
AKR/J	ENSMUSG00220051523	lncRNA gene	Chr3:90271140-90274080 (-)
BALB/cJ	ENSMUSG00180041802	lncRNA gene	Chr3:91883814-91886754 (-)
C3H/HeJ	ENSMUSG00175029928	lncRNA gene	Chr3:91527866-91530806 (-)
C57BL/6NJ	ENSMUSG00215037329	lncRNA gene	Chr3:92246191-92249131 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003400	antisense lncRNA gene	Chr3:89089779-89092912 (-)
CAST/EiJ	ENSTCUG00005048448	lncRNA gene	Chr3:92088007-92090954 (-)
CBA/J	ENSMUSG00210051677	lncRNA gene	Chr3:92065346-92068286 (-)
DBA/2J	ENSMUSG00185045761	lncRNA gene	Chr3:92481921-92484861 (-)
FVB/NJ	ENSMUSG00205050234	lncRNA gene	Chr3:91181578-91184518 (-)
JF1/MsJ	ENSUMUG00000054523	lncRNA gene	Chr3:91383432-91386374 (-)
LP/J	ENSMUSG00230045500	lncRNA gene	Chr3:94420252-94423192 (-)
NOD/ShiLtJ	ENSMUSG00190047406	lncRNA gene	Chr3:92575225-92578165 (-)
NZO/HlLtJ	ENSMUSG00225012499	lncRNA gene	Chr3:96845367-96848307 (-)
PWK/PhJ	ENSLUMG00010052923	lncRNA gene	Chr3:91363226-91366168 (-)
SPRET/EiJ	ENSMSPG00010046754	lncRNA gene	Chr3:91669617-91672591 (-)
WSB/EiJ	ENSIUOG00005032473	lncRNA gene	Chr3:92004215-92007155 (-)

Homology

• Gene Tree
  A730011C13Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving A730011C13Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000084846 (Evidence)
• NCBI Gene
  319916

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084846	Ensembl Gene Model | MGI Sequence Detail	2941	C57BL/6J
transcript	ENSMUST00000141787	Ensembl | MGI Sequence Detail	1877	Not Applicable

Molecular
Reagents

• All nucleic 9

  cDNA 9

Other
Accession IDs

MGI:2140029

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for A730011C13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34411	Chr3:94904408-94904431 (-)	241 bp