D830024N08Rik Gene Detail

Summary

• Symbol
  D830024N08Rik
• Name
  RIKEN cDNA D830024N08 gene
• Synonyms
  Gm45707

• Feature Type
  lncRNA gene
• IDs
  MGI:2442966
  NCBI Gene: 105246804
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:84302663-84323940 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  707 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442966	lncRNA gene	Chr8:84301157-84323940 (+)
129S1/SvImJ	ENSMUSG00200027075	lncRNA gene	Chr8:78673137-78683024 (+)
A/J	ENSMUSG00195020046	lncRNA gene	Chr8:79030780-79040669 (+)
AKR/J	ENSMUSG00220023581	lncRNA gene	Chr8:79070609-79080496 (+)
BALB/cJ	ENSMUSG00180022530	lncRNA gene	Chr8:78871818-78881705 (+)
C3H/HeJ	ENSMUSG00175011800	lncRNA gene	Chr8:78961685-78971573 (+)
C57BL/6NJ	ENSMUSG00215021206	lncRNA gene	Chr8:78596756-78606639 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037243	lncRNA gene	Chr8:78478657-78488524 (+)
CBA/J	ENSMUSG00210020317	lncRNA gene	Chr8:78953984-78963872 (+)
DBA/2J	ENSMUSG00185038236	lncRNA gene	Chr8:85062792-85072680 (+)
FVB/NJ	ENSMUSG00205038445	lncRNA gene	Chr8:78008329-78018207 (+)
JF1/MsJ	ENSUMUG00000041385	lncRNA gene	Chr8:87353026-87362872 (+)
LP/J	ENSMUSG00230030434	lncRNA gene	Chr8:88670063-88679950 (+)
NOD/ShiLtJ	ENSMUSG00190033090	lncRNA gene	Chr8:79022381-79031859 (+)
NZO/HlLtJ	ENSMUSG00225040880	lncRNA gene	Chr8:92057922-92067798 (+)
PWK/PhJ	ENSLUMG00010029671	lncRNA gene	Chr8:78711507-78721340 (+)
SPRET/EiJ	ENSMSPG00010024961	lncRNA gene	Chr8:80615878-80625585 (+)
WSB/EiJ	ENSIUOG00005016174	lncRNA gene	Chr8:79764507-79773983 (+)

Homology

• Gene Tree
  D830024N08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  5
• Genomic Mutations
  1 involving D830024N08Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  6

• Ensembl
  ENSMUSG00000110580 (Evidence)
• NCBI Gene
  105246804

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110580	Ensembl Gene Model | MGI Sequence Detail	21278	C57BL/6J
transcript	ENSMUST00000310246	Ensembl | MGI Sequence Detail	3631	Not Applicable

Molecular
Reagents

• All nucleic 6

  cDNA 6

Other
Accession IDs

MGI:5804822

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for D830024N08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78267	Chr8:84302668-84302679 (+)	11 bp
Tssr78268	Chr8:84302817-84302880 (+)	186 bp