A930012L18Rik Gene Detail

Summary

• Symbol
  A930012L18Rik
• Name
  RIKEN cDNA A930012L18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442887
  NCBI Gene: 626275
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:44794732-44809338 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 23.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  568 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442887	lncRNA gene	Chr18:44794732-44809338 (+)
129S1/SvImJ	ENSMUSG00200030757	lncRNA gene	Chr18:41837572-41852091 (+)
A/J	ENSMUSG00195025426	lncRNA gene	Chr18:42006924-42021403 (+)
AKR/J	ENSMUSG00220021448	lncRNA gene	Chr18:41966109-41980588 (+)
BALB/cJ	ENSMUSG00180008070	lncRNA gene	Chr18:42466097-42480576 (+)
C3H/HeJ	ENSMUSG00175011116	lncRNA gene	Chr18:41984790-41999269 (+)
C57BL/6NJ	ENSMUSG00215009177	lncRNA gene	Chr18:41680276-41694881 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003071	antisense lncRNA gene	Chr18:41646384-41659726 (+)
CAST/EiJ	ENSTCUG00005014401	lncRNA gene	Chr18:41495772-41510210 (+)
CBA/J	ENSMUSG00210022606	lncRNA gene	Chr18:42031788-42046267 (+)
DBA/2J	ENSMUSG00185028923	lncRNA gene	Chr18:41940508-41954987 (+)
FVB/NJ	ENSMUSG00205016059	lncRNA gene	Chr18:41548681-41563200 (+)
JF1/MsJ	ENSUMUG00000030463	lncRNA gene	Chr18:42042417-42056928 (+)
LP/J	ENSMUSG00230029134	lncRNA gene	Chr18:44027220-44041739 (+)
NOD/ShiLtJ	ENSMUSG00190029476	lncRNA gene	Chr18:41699426-41713906 (+)
NZO/HlLtJ	ENSMUSG00225027543	lncRNA gene	Chr18:43894881-43909487 (+)
PWK/PhJ	ENSLUMG00010022634	lncRNA gene	Chr18:42126623-42141144 (+)
SPRET/EiJ	ENSMSPG00010013966	lncRNA gene	Chr18:42279005-42293452 (+)
WSB/EiJ	ENSIUOG00005009910	lncRNA gene	Chr18:41653442-41667966 (+)

Homology

• Gene Tree
  A930012L18Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000097610 (Evidence)
• NCBI Gene
  626275

Representative Sequences			Length	Strain/Species
genomic	626275	NCBI Gene Model | MGI Sequence Detail	14607	C57BL/6J
transcript	NR_026853	RefSeq | MGI Sequence Detail	2364	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 7
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A930012L18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150925	Chr18:44795180-44795191 (+)	454 bp