A530020G20Rik Gene Detail

Summary

• Symbol
  A530020G20Rik
• Name
  RIKEN cDNA A530020G20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442825
  NCBI Gene: 319839
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr3:121325260-121329856 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  272 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442825	lncRNA gene	Chr3:121325260-121356072 (+)
129S1/SvImJ	ENSMUSG00200027541	lncRNA gene	Chr3:118008251-118012844 (+)
A/J	ENSMUSG00195016168	lncRNA gene	Chr3:118227044-118231637 (+)
AKR/J	ENSMUSG00220027124	lncRNA gene	Chr3:116620816-116625435 (+)
BALB/cJ	ENSMUSG00180030392	lncRNA gene	Chr3:118163500-118168097 (+)
C3H/HeJ	ENSMUSG00175027196	lncRNA gene	Chr3:117710411-117715002 (+)
C57BL/6NJ	ENSMUSG00215008929	lncRNA gene	Chr3:118458527-118463122 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003436	antisense lncRNA gene	Chr3:115037570-115041704 (+)
CAST/EiJ	ENSTCUG00005033483	lncRNA gene	Chr3:118713073-118717658 (+)
CBA/J	ENSMUSG00210002903	lncRNA gene	Chr3:118341339-118345928 (+)
DBA/2J	ENSMUSG00185008200	lncRNA gene	Chr3:118916800-118921385 (+)
FVB/NJ	ENSMUSG00205008374	lncRNA gene	Chr3:117284719-117289346 (+)
JF1/MsJ	ENSUMUG00000003745	lncRNA gene	Chr3:117795727-117800314 (+)
LP/J	ENSMUSG00230011645	lncRNA gene	Chr3:120858914-120863501 (+)
NOD/ShiLtJ	ENSMUSG00190035586	lncRNA gene	Chr3:119295940-119300553 (+)
NZO/HlLtJ	ENSMUSG00225003576	lncRNA gene	Chr3:123354830-123359457 (+)
PWK/PhJ	ENSLUMG00010009693	lncRNA gene	Chr3:117701325-117705941 (+)
SPRET/EiJ	ENSMSPG00010030202	lncRNA gene	Chr3:118432063-118436487 (+)
WSB/EiJ	ENSIUOG00005007107	lncRNA gene	Chr3:118507168-118511718 (+)

Homology

• Gene Tree
  A530020G20Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving A530020G20Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  685
• Tissues
  9
• cDNA Data
  11
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1

• Ensembl
  ENSMUSG00000097124 (Evidence)
• NCBI Gene
  319839

Representative Sequences			Length	Strain/Species
genomic	319839	NCBI Gene Model | MGI Sequence Detail	4597	C57BL/6J
transcript	NR_190113	RefSeq | MGI Sequence Detail	3669	C57BL/6

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:5621569

References

• Summaries
  All 16

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for A530020G20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31448	Chr3:121325240-121325249 (+)	-15 bp
Tssr31449	Chr3:121325252-121325283 (+)	8 bp
Tssr31450	Chr3:121325302-121325327 (+)	55 bp
Tssr31451	Chr3:121326304-121326316 (+)	1,050 bp