5031434C07Rik Gene Detail

Summary

• Symbol
  5031434C07Rik
• Name
  RIKEN cDNA 5031434C07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442810
  NCBI Gene: 100503613
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:112262554-112265798 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 52.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  208 from dbSNP Build 142
• Strain Annotations
  29

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442810	lncRNA gene	Chr6:112262554-112267280 (-)
129S1/SvImJ	ENSMUSG00200023177	protein coding gene	Chr6:109282265-109313919 (-)
129S1/SvImJ	ENSMUSG00200026178	lncRNA gene	Chr6:109311034-109314280 (-)
A/J	ENSMUSG00195016592	protein coding gene	Chr6:108954169-108985758 (-)
A/J	ENSMUSG00195017549	lncRNA gene	Chr6:108982875-108986119 (-)
AKR/J	ENSMUSG00220030384	protein coding gene	Chr6:107879511-107911158 (-)
AKR/J	ENSMUSG00220036100	lncRNA gene	Chr6:107908275-107911519 (-)
BALB/cJ	ENSMUSG00180002422	lncRNA gene	Chr6:109348111-109351357 (-)
BALB/cJ	ENSMUSG00180002098	protein coding gene	Chr6:109319404-109350996 (-)
C3H/HeJ	ENSMUSG00175033682	lncRNA gene	Chr6:68055462-68058704 (+)
C3H/HeJ	ENSMUSG00175026567	protein coding gene	Chr6:68055823-68087455 (+)
C57BL/6NJ	ENSMUSG00215020918	protein coding gene	Chr6:109312766-109344425 (-)
C57BL/6NJ	ENSMUSG00215027580	lncRNA gene	Chr6:109341542-109344786 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003915	antisense lncRNA gene	Chr6:107381462-107384672 (-)
CAST/EiJ	ENSTCUG00005031065	lncRNA gene	Chr6:109176043-109179115 (-)
CBA/J	ENSMUSG00210020324	protein coding gene	Chr6:109139498-109171159 (-)
CBA/J	ENSMUSG00210020586	lncRNA gene	Chr6:109168274-109171520 (-)
DBA/2J	ENSMUSG00185018795	lncRNA gene	Chr6:109563324-109566534 (-)
FVB/NJ	ENSMUSG00205018010	protein coding gene	Chr6:108206240-108237840 (-)
FVB/NJ	ENSMUSG00205027875	lncRNA gene	Chr6:108234957-108238201 (-)
JF1/MsJ	ENSUMUG00000031060	lncRNA gene	Chr6:108287069-108290292 (-)
LP/J	ENSMUSG00230001560	protein coding gene	Chr6:110783638-110815287 (-)
LP/J	ENSMUSG00230001742	lncRNA gene	Chr6:110812404-110815648 (-)
NOD/ShiLtJ	ENSMUSG00190019052	lncRNA gene	Chr6:108739570-108742816 (-)
NOD/ShiLtJ	ENSMUSG00190016713	protein coding gene	Chr6:108710860-108742455 (-)
NZO/HlLtJ	ENSMUSG00225048389	lncRNA gene	Chr6:112777635-112780844 (-)
PWK/PhJ	ENSLUMG00010027811	lncRNA gene	Chr6:107776358-107779581 (-)
SPRET/EiJ	ENSMSPG00010014927	lncRNA gene	Chr6:110537688-110540947 (-)
WSB/EiJ	ENSIUOG00005025316	lncRNA gene	Chr6:109507782-109510997 (-)

Homology

• Gene Tree
  5031434C07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving 5031434C07Rik
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000044574 (Evidence)
• NCBI Gene
  100503613

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000044574	Ensembl Gene Model | MGI Sequence Detail	3245	C57BL/6J
transcript	ENSMUST00000188014	Ensembl | MGI Sequence Detail	3244	Not Applicable
polypeptide	Q8C331	UniProt | EBI | MGI Sequence Detail	131	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376