9630010A21Rik Gene Detail

Summary

• Symbol
  9630010A21Rik
• Name
  RIKEN cDNA 9630010A21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442787
  NCBI Gene: 319816
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:194696054-194698756 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442787	lncRNA gene	Chr1:194696054-194698756 (+)
129S1/SvImJ	ENSMUSG00200005016	unclassified gene	Chr1:192489372-192492073 (+)
A/J	ENSMUSG00195008846	unclassified gene	Chr1:192071940-192074668 (+)
AKR/J	ENSMUSG00220005016	unclassified gene	Chr1:191319332-191322034 (+)
BALB/cJ	ENSMUSG00180018983	unclassified gene	Chr1:192138886-192141589 (+)
C3H/HeJ	ENSMUSG00175023270	unclassified gene	Chr1:192346027-192348754 (+)
C57BL/6NJ	ENSMUSG00215021448	unclassified gene	Chr1:191532409-191535111 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000586	unclassified gene	Chr1:185290563-185293285 (+)
CAST/EiJ	ENSTCUG00005002159	unclassified gene	Chr1:190097829-190100536 (+)
CBA/J	ENSMUSG00210003586	unclassified gene	Chr1:192004830-192007537 (+)
DBA/2J	ENSMUSG00185011099	unclassified gene	Chr1:196605592-196608319 (+)
FVB/NJ	ENSMUSG00205004679	unclassified gene	Chr1:190973945-190976648 (+)
JF1/MsJ	ENSUMUG00000009499	unclassified gene	Chr1:195580464-195583169 (+)
LP/J	ENSMUSG00230002241	unclassified gene	Chr1:196108231-196110931 (+)
NOD/ShiLtJ	ENSMUSG00190033979	unclassified gene	Chr1:191974837-191977549 (+)
NZO/HlLtJ	ENSMUSG00225016169	unclassified gene	Chr1:199872885-199875590 (+)
PWK/PhJ	ENSLUMG00010006579	unclassified gene	Chr1:190823572-190826274 (+)
SPRET/EiJ	ENSMSPG00010024904	unclassified gene	Chr1:194345969-194348669 (+)
WSB/EiJ	ENSIUOG00005005122	unclassified gene	Chr1:191296571-191299289 (+)

Homology

• Gene Tree
  9630010A21Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000103867 (Evidence)
• NCBI Gene
  319816

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103867	Ensembl Gene Model | MGI Sequence Detail	2703	C57BL/6J
transcript	AK038527	GenBank | ENA | DDBJ | MGI Sequence Detail	2706	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9630010A21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10858	Chr1:194695928-194695936 (+)	-122 bp