A730056A06Rik Gene Detail

Summary

• Symbol
  A730056A06Rik
• Name
  RIKEN cDNA A730056A06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442718
  NCBI Gene: 319783
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:72963554-73025522 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 41.83 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2057 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442718	lncRNA gene	Chr7:72959900-73025522 (-)
129S1/SvImJ	ENSMUSG00200013033	lncRNA gene	Chr7:59725974-59791156 (-)
A/J	ENSMUSG00195015196	lncRNA gene	Chr7:64119648-64185298 (-)
AKR/J	ENSMUSG00220020841	lncRNA gene	Chr7:57665400-57731654 (-)
BALB/cJ	ENSMUSG00180004922	lncRNA gene	Chr7:60829358-60894403 (-)
C3H/HeJ	ENSMUSG00175022268	lncRNA gene	Chr7:61626550-61692178 (-)
C57BL/6NJ	ENSMUSG00215020508	lncRNA gene	Chr7:60758674-60826352 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004031	antisense lncRNA gene	Chr7:75825961-75887433 (-)
CAST/EiJ	ENSTCUG00005004414	lncRNA gene	Chr7:64250537-64313255 (-)
CBA/J	ENSMUSG00210024344	lncRNA gene	Chr7:61480984-61550933 (-)
DBA/2J	ENSMUSG00185001318	lncRNA gene	Chr7:65802676-65873630 (-)
FVB/NJ	ENSMUSG00205025314	lncRNA gene	Chr7:61454136-61520262 (-)
JF1/MsJ	ENSUMUG00000010093	lncRNA gene	Chr7:70527083-70589615 (-)
LP/J	ENSMUSG00230016780	lncRNA gene	Chr7:71863125-71928347 (-)
NOD/ShiLtJ	ENSMUSG00190019125	lncRNA gene	Chr7:61580736-61646105 (-)
NZO/HlLtJ	ENSMUSG00225017171	lncRNA gene	Chr7:70124592-70196174 (-)
PWK/PhJ	ENSLUMG00010019042	lncRNA gene	Chr7:60068318-60138115 (-)
SPRET/EiJ	ENSMSPG00010003316	lncRNA gene	Chr7:60502176-60571240 (-)
WSB/EiJ	ENSIUOG00005023009	lncRNA gene	Chr7:61948783-62012758 (-)

Homology

• Gene Tree
  A730056A06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving A730056A06Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2

• Ensembl
  ENSMUSG00000097756 (Evidence)
• NCBI Gene
  319783

Representative Sequences			Length	Strain/Species
genomic	319783	NCBI Gene Model | MGI Sequence Detail	61969	C57BL/6J
transcript	NR_040324	RefSeq | MGI Sequence Detail	2973	C57BL/6

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2142306

References

• Summaries
  All 25

  Phenotypes 13
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for A730056A06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72936	Chr7:73025470-73025492 (-)	41 bp