A230009B12Rik Gene Detail

Summary

• Symbol
  A230009B12Rik
• Name
  RIKEN cDNA A230009B12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442666
  NCBI Gene: 319750
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:10675145-10711986 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 7.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  64 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442666	lncRNA gene	Chr17:10675145-10711986 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003368	antisense lncRNA gene	Chr17:8056801-8093671 (+)
A/J	MGP_AJ_G0003344	antisense lncRNA gene	Chr17:7952512-7990170 (+)
AKR/J	MGP_AKRJ_G0003327	antisense lncRNA gene	Chr17:7693531-7731661 (+)
BALB/cJ	MGP_BALBcJ_G0003333	antisense lncRNA gene	Chr17:7740574-7777812 (+)
C3H/HeJ	MGP_C3HHeJ_G0003286	antisense lncRNA gene	Chr17:7987775-8028744 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003474	antisense lncRNA gene	Chr17:8363440-8402277 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002994	antisense lncRNA gene	Chr17:6425238-6462513 (-)
CAST/EiJ	MGP_CASTEiJ_G0003249	antisense lncRNA gene	Chr17:8009434-8050396 (+)
CBA/J	MGP_CBAJ_G0003282	antisense lncRNA gene	Chr17:8687909-8730937 (+)
DBA/2J	MGP_DBA2J_G0003288	antisense lncRNA gene	Chr17:7593895-7630925 (+)
FVB/NJ	MGP_FVBNJ_G0003306	antisense lncRNA gene	Chr17:7549046-7587315 (+)
LP/J	MGP_LPJ_G0003361	antisense lncRNA gene	Chr17:7838957-7878727 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003295	antisense lncRNA gene	Chr17:8354549-8393667 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003477	antisense lncRNA gene	Chr17:8004716-8042173 (+)
PWK/PhJ	MGP_PWKPhJ_G0003209	antisense lncRNA gene	Chr17:7285736-7323699 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003153	antisense lncRNA gene	Chr17:7348171-7390733 (+)
WSB/EiJ	MGP_WSBEiJ_G0003283	antisense lncRNA gene	Chr17:8304960-8344414 (+)

Homology

• Gene Tree
  A230009B12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  3

• Ensembl
  ENSMUSG00000089633 (Evidence)
• NCBI Gene
  319750

Representative Sequences			Length	Strain/Species
genomic	319750	NCBI Gene Model | MGI Sequence Detail	36842	C57BL/6J
transcript	NR_077237	RefSeq | MGI Sequence Detail	1892	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for A230009B12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142574	Chr17:10675222-10675227 (+)	80 bp