C130023A14Rik Gene Detail

Summary

• Symbol
  C130023A14Rik
• Name
  RIKEN cDNA C130023A14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442654
  NCBI Gene: 319747
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:77443228-77446314 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442654	lncRNA gene	Chr16:77443228-77446314 (+)
129S1/SvImJ	ENSMUSG00200016177	unclassified gene	Chr16:74319171-74322226 (+)
A/J	ENSMUSG00195023866	unclassified gene	Chr16:74102798-74105886 (+)
AKR/J	ENSMUSG00220018143	unclassified gene	Chr16:74286526-74289616 (+)
BALB/cJ	ENSMUSG00180002167	unclassified gene	Chr16:74177989-74181077 (+)
C3H/HeJ	ENSMUSG00175009087	unclassified gene	Chr16:74465611-74468699 (+)
C57BL/6NJ	ENSMUSG00215001655	unclassified gene	Chr16:74301896-74304986 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000744	unclassified gene	Chr16:72810277-72813444 (+)
CAST/EiJ	ENSTCUG00005007536	unclassified gene	Chr16:74117672-74120833 (+)
CBA/J	ENSMUSG00210019740	unclassified gene	Chr16:74410676-74413762 (+)
DBA/2J	ENSMUSG00185005141	unclassified gene	Chr16:74337305-74340387 (+)
FVB/NJ	ENSMUSG00205014972	unclassified gene	Chr16:74196400-74199485 (+)
JF1/MsJ	ENSUMUG00000016005	unclassified gene	Chr16:74492411-74495587 (+)
LP/J	ENSMUSG00230020663	unclassified gene	Chr16:76905466-76908519 (+)
NOD/ShiLtJ	ENSMUSG00190011746	unclassified gene	Chr16:74336840-74339920 (+)
NZO/HlLtJ	ENSMUSG00225029670	unclassified gene	Chr16:80111063-80114138 (+)
PWK/PhJ	ENSLUMG00010005416	unclassified gene	Chr16:74145907-74149067 (+)
SPRET/EiJ	ENSMSPG00010015487	unclassified gene	Chr16:75022431-75025583 (+)
WSB/EiJ	ENSIUOG00005017587	unclassified gene	Chr16:74335985-74339052 (+)

Homology

• Gene Tree
  C130023A14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  1
• Genomic Mutations
  2 involving C130023A14Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000102854 (Evidence)
• NCBI Gene
  319747

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102854	Ensembl Gene Model | MGI Sequence Detail	3087	C57BL/6J
transcript	AK047945	GenBank | ENA | DDBJ | MGI Sequence Detail	3091	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:361105 Tateossian H, et al., DYRK1A kinase triplication is the major cause of Otitis Media in Down Syndrome. Elife. 2025;

TSS for C130023A14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139109	Chr16:77443226-77443230 (+)	0 bp