9630013D21Rik MGI Mouse Gene Detail - MGI:2442649

Symbol

9630013D21Rik
Name

RIKEN cDNA 9630013D21 gene

Feature Type

lncRNA gene
IDs

MGI:2442649
NCBI Gene: 319743
Alliance

genome feature page
Transcription Start Sites

2 TSS

Sequence Map

Chr4:109509624-109514785 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 4, 51.32 cM
Mapping Data

1 experiment

SNPs within 2kb

134 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442649	lncRNA gene	Chr4:109486478-109515088 (-)
129S1/SvImJ	ENSMUSG00200050058	lncRNA gene	Chr4:104554500-104560824 (-)
129S1/SvImJ	ENSMUSG00200044742	protein coding gene	Chr4:104554954-104560776 (-)
A/J	ENSMUSG00195047977	lncRNA gene	Chr4:105104813-105111138 (-)
A/J	ENSMUSG00195045443	protein coding gene	Chr4:105105267-105111090 (-)
AKR/J	ENSMUSG00220010714	protein coding gene	Chr4:104467657-104473479 (-)
AKR/J	ENSMUSG00220012566	lncRNA gene	Chr4:104467203-104473527 (-)
BALB/cJ	ENSMUSG00180044671	protein coding gene	Chr4:103930807-103936627 (-)
BALB/cJ	ENSMUSG00180047762	lncRNA gene	Chr4:103930354-103936675 (-)
C3H/HeJ	ENSMUSG00175044622	lncRNA gene	Chr4:104934607-104940927 (-)
C3H/HeJ	ENSMUSG00175031905	protein coding gene	Chr4:104935060-104940879 (-)
C57BL/6NJ	ENSMUSG00215033834	lncRNA gene	Chr4:104842297-104848621 (-)
C57BL/6NJ	ENSMUSG00215029455	protein coding gene	Chr4:104842751-104848573 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013695	unclassified non-coding RNA gene	Chr4:101742149-101748488 (-)
CAST/EiJ	ENSTCUG00005022526	lncRNA gene	Chr4:104035494-104041829 (-)
CBA/J	ENSMUSG00210053279	lncRNA gene	Chr4:104567625-104573945 (-)
CBA/J	ENSMUSG00210052233	protein coding gene	Chr4:104568078-104573897 (-)
DBA/2J	ENSMUSG00185051040	lncRNA gene	Chr4:105270630-105276954 (-)
DBA/2J	ENSMUSG00185048318	protein coding gene	Chr4:105271084-105276906 (-)
FVB/NJ	ENSMUSG00205031475	protein coding gene	Chr4:103508465-103514287 (-)
FVB/NJ	ENSMUSG00205044903	lncRNA gene	Chr4:103508011-103514335 (-)
JF1/MsJ	ENSUMUG00000048426	lncRNA gene	Chr4:105285764-105292118 (-)
LP/J	ENSMUSG00230008607	protein coding gene	Chr4:108591236-108597058 (-)
LP/J	ENSMUSG00230009475	lncRNA gene	Chr4:108590782-108597106 (-)
NOD/ShiLtJ	ENSMUSG00190047445	lncRNA gene	Chr4:103937429-103943749 (-)
NOD/ShiLtJ	ENSMUSG00190027685	protein coding gene	Chr4:103937882-103943701 (-)
NZO/HlLtJ	ENSMUSG00225011500	lncRNA gene	Chr4:113692025-113698349 (-)
NZO/HlLtJ	ENSMUSG00225010549	protein coding gene	Chr4:113692479-113698301 (-)
PWK/PhJ	ENSLUMG00010048179	lncRNA gene	Chr4:102991282-102997616 (-)
SPRET/EiJ	ENSMSPG00010030051	lncRNA gene	Chr4:105226747-105233024 (-)
WSB/EiJ	ENSIUOG00005044242	lncRNA gene	Chr4:104124690-104131010 (-)

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Gene Tree

9630013D21Rik

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Phenotype Summary

6 phenotype references

All Mutations and Alleles

4
Chemically induced (other)

2
Radiation induced

1
Targeted

1
Genomic Mutations

4 involving 9630013D21Rik
Find Mice (IMSR)

0 strains or lines available

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

6

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

125
RefSeq

2
UniProt

1

Ensembl

ENSMUSG00000059027 (Evidence)
NCBI Gene

319743

			Length	Strain/Species	Flank
genomic	319743	NCBI Gene Model \| MGI Sequence Detail	5162	C57BL/6J	± kb
transcript	NR_166454	RefSeq \| MGI Sequence Detail	1017	C57BL/6
polypeptide	Q8BFV1	UniProt \| EBI \| MGI Sequence Detail	109	Not Applicable

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UniProt

1 Sequence

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All nucleic 6

cDNA 6

Microarray probesets 1

Summaries

All 18

Phenotypes 6
Earliest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 9630013D21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42774	Chr4:109515016-109515043 (-)	-245 bp
Tssr42773	Chr4:109513723-109513737 (-)	1,055 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/15/2026 MGI 6.29