9430053O09Rik Gene Detail

Summary

• Symbol
  9430053O09Rik
• Name
  RIKEN cDNA 9430053O09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442604
  NCBI Gene: 102633149
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr16:77216137-77218916 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442604	lncRNA gene	Chr16:77190427-77219771 (-)
129S1/SvImJ	ENSMUSG00200016033	unclassified gene	Chr16:74092107-74094886 (-)
A/J	ENSMUSG00195022870	unclassified gene	Chr16:73875579-73878360 (-)
AKR/J	ENSMUSG00220018223	unclassified gene	Chr16:74059391-74062170 (-)
BALB/cJ	ENSMUSG00180002224	unclassified gene	Chr16:73950880-73953660 (-)
C3H/HeJ	ENSMUSG00175009010	unclassified gene	Chr16:74238470-74241249 (-)
C57BL/6NJ	ENSMUSG00215001755	unclassified gene	Chr16:74074767-74077546 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000738	unclassified gene	Chr16:72583766-72586353 (-)
CAST/EiJ	ENSTCUG00005007933	unclassified gene	Chr16:73889067-73891856 (-)
CBA/J	ENSMUSG00210020120	unclassified gene	Chr16:74183540-74186319 (-)
DBA/2J	ENSMUSG00185005247	unclassified gene	Chr16:74110261-74113042 (-)
FVB/NJ	ENSMUSG00205016298	unclassified gene	Chr16:73971000-73973779 (-)
JF1/MsJ	ENSUMUG00000012351	unclassified gene	Chr16:74264296-74267073 (-)
LP/J	ENSMUSG00230020779	unclassified gene	Chr16:76678421-76681200 (-)
NOD/ShiLtJ	ENSMUSG00190011183	unclassified gene	Chr16:74109750-74112529 (-)
NZO/HlLtJ	ENSMUSG00225029698	unclassified gene	Chr16:79883795-79886574 (-)
PWK/PhJ	ENSLUMG00010004984	unclassified gene	Chr16:73917867-73920646 (-)
SPRET/EiJ	ENSMSPG00010015413	unclassified gene	Chr16:74791385-74794170 (-)
WSB/EiJ	ENSIUOG00005017305	unclassified gene	Chr16:74101024-74103814 (-)

Homology

• Gene Tree
  9430053O09Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  4
• Targeted
  3
• Genomic Mutations
  4 involving 9430053O09Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  8
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  9
• UniProt
  1

• Ensembl
  ENSMUSG00000102344 (Evidence)
• NCBI Gene
  102633149

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102344	Ensembl Gene Model | MGI Sequence Detail	2780	C57BL/6J
transcript	AK034881	GenBank | ENA | DDBJ | MGI Sequence Detail	3380	C57BL/6J
polypeptide	Q3US56	UniProt | EBI | MGI Sequence Detail	88	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 1

References

• Summaries
  All 23

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 11
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:361105 Tateossian H, et al., DYRK1A kinase triplication is the major cause of Otitis Media in Down Syndrome. Elife. 2025;

TSS for 9430053O09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141833	Chr16:77218856-77218903 (-)	36 bp
Tssr141832	Chr16:77218775-77218799 (-)	129 bp
Tssr141831	Chr16:77218674-77218685 (-)	236 bp
Tssr141830	Chr16:77218619-77218631 (-)	291 bp
Tssr141829	Chr16:77218557-77218572 (-)	351 bp
Tssr141828	Chr16:77218478-77218494 (-)	430 bp
Tssr141827	Chr16:77217167-77217196 (-)	1,734 bp