6330549D23Rik Pseudogene Detail

Summary

• Symbol
  6330549D23Rik
• Name
  RIKEN cDNA 6330549D23 gene

• Feature Type
  pseudogene
• IDs
  MGI:2442586
  NCBI Gene: 229613
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:96514940-96516041 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442586	pseudogene	Chr3:96513978-96537135 (-)
129S1/SvImJ	ENSMUSG00200046150	pseudogene	Chr3:93142535-93165720 (-)
A/J	ENSMUSG00195050632	pseudogene	Chr3:93546035-93569209 (-)
AKR/J	ENSMUSG00220042274	pseudogene	Chr3:91891779-91914944 (-)
BALB/cJ	ENSMUSG00180042039	pseudogene	Chr3:93487988-93511162 (-)
C3H/HeJ	ENSMUSG00175032371	pseudogene	Chr3:93104455-93127629 (-)
C57BL/6NJ	ENSMUSG00215038158	pseudogene	Chr3:93869177-93892339 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020787	pseudogene	Chr3:93688702-93711872 (-)
CBA/J	ENSMUSG00210051429	pseudogene	Chr3:93657479-93680654 (-)
DBA/2J	ENSMUSG00185047692	pseudogene	Chr3:94110207-94133368 (-)
FVB/NJ	ENSMUSG00205027766	pseudogene	Chr3:92765875-92789051 (-)
JF1/MsJ	ENSUMUG00000049591	pseudogene	Chr3:92953937-92976905 (-)
LP/J	ENSMUSG00230046061	pseudogene	Chr3:96074377-96097560 (-)
NOD/ShiLtJ	ENSMUSG00190049755	pseudogene	Chr3:94203118-94226289 (-)
NZO/HlLtJ	ENSMUSG00225012320	pseudogene	Chr3:98453224-98476398 (-)
PWK/PhJ	ENSLUMG00010032982	pseudogene	Chr3:92946831-92969713 (-)
SPRET/EiJ	ENSMSPG00010046877	pseudogene	Chr3:93244583-93268482 (-)
WSB/EiJ	ENSIUOG00005031213	pseudogene	Chr3:93604467-93627636 (-)

Homology

• Gene Tree
  6330549D23Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  2 involving 6330549D23Rik
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000045327 (Evidence)
• NCBI Gene
  229613

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045327	Ensembl Gene Model | MGI Sequence Detail	1102	C57BL/6J
transcript	ENSMUST00000159536	Ensembl | MGI Sequence Detail	1102	Not Applicable
polypeptide	Q8CCV6	UniProt | EBI | MGI Sequence Detail	187	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR039841 Integrator complex subunit 14
  IPR045814 Integrator complex subunit 14, beta-barrel domain

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 20

  Diseases 1

  Phenotypes 8
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426