C230013L11Rik Gene Detail

Summary

• Symbol
  C230013L11Rik
• Name
  RIKEN cDNA C230013L11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442581
  NCBI Gene: 100504186
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:28393631-28396656 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 14.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442581	lncRNA gene	Chr17:28393631-28396656 (-)
129S1/SvImJ	ENSMUSG00200054347	lncRNA gene	Chr17:24051796-24054821 (-)
A/J	ENSMUSG00195054448	lncRNA gene	Chr17:24868132-24871157 (-)
AKR/J	ENSMUSG00220053784	lncRNA gene	Chr17:23915770-23918795 (-)
BALB/cJ	ENSMUSG00180051850	lncRNA gene	Chr17:24354241-24357266 (-)
C3H/HeJ	ENSMUSG00175054166	lncRNA gene	Chr17:23904215-23907240 (-)
C57BL/6NJ	ENSMUSG00215054380	lncRNA gene	Chr17:23904303-23907328 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051420	lncRNA gene	Chr17:24646450-24649478 (-)
CBA/J	ENSMUSG00210051461	lncRNA gene	Chr17:23742682-23745707 (-)
DBA/2J	ENSMUSG00185053713	lncRNA gene	Chr17:25957628-25960653 (-)
FVB/NJ	ENSMUSG00205053529	lncRNA gene	Chr17:24219145-24222170 (-)
JF1/MsJ	ENSUMUG00000057708	lncRNA gene	Chr17:25418555-25421584 (-)
LP/J	ENSMUSG00230055160	lncRNA gene	Chr17:27477635-27480660 (-)
NOD/ShiLtJ	ENSMUSG00190054138	lncRNA gene	Chr17:23851826-23854851 (-)
NZO/HlLtJ	ENSMUSG00225054442	lncRNA gene	Chr17:29445641-29448666 (-)
PWK/PhJ	ENSLUMG00010053374	lncRNA gene	Chr17:23343273-23346301 (-)
SPRET/EiJ	ENSMSPG00010050655	lncRNA gene	Chr17:24636236-24639268 (-)
WSB/EiJ	ENSIUOG00005051323	lncRNA gene	Chr17:24611708-24614733 (-)

Homology

• Gene Tree
  C230013L11Rik
  

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000117171 (Evidence)
• NCBI Gene
  100504186

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117171	Ensembl Gene Model | MGI Sequence Detail	3026	C57BL/6J
transcript	ENSMUST00000233181	Ensembl | MGI Sequence Detail	3026	Not Applicable
polypeptide	Q8C4H7	UniProt | EBI | MGI Sequence Detail	103	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

References

• Summaries
  All 8
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for C230013L11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147097	Chr17:28396615-28396656 (-)	20 bp